BIOPHYSICAL THEORY AND MODELING:

Jennifer A. Hayward, John L. Finney, Roy M. Daniel, and Jeremy C. Smith

Molecular Dynamics Decomposition of Temperature-Dependent Elastic Neutron Scattering by a Protein Solution
Biophys. J. 2003 85: 679-685. [Abstract] [Full Text] [PDF]  

M. Boström, D. R. M. Williams, and B. W. Ninham

Specific Ion Effects: Why the Properties of Lysozyme in Salt Solutions Follow a Hofmeister Series
Biophys. J. 2003 85: 686-694. [Abstract] [Full Text] [PDF]  

Iris Antes, David Chandler, Hongyun Wang, and George Oster

The Unbinding of ATP from F₁-ATPase
Biophys. J. 2003 85: 695-706. [Abstract] [Full Text] [PDF]  

R. V. Kulkarni, A. Slepoy, R. R. P. Singh, D. L. Cox, and F. Pázmándi

Theoretical Modeling of Prion Disease Incubation
Biophys. J. 2003 85: 707-718. [Abstract] [Full Text] [PDF]  

Mojca Pavlin and Damijan Miklavcic

Effective Conductivity of a Suspension of Permeabilized Cells: A Theoretical Analysis
Biophys. J. 2003 85: 719-729. [Abstract] [Full Text] [PDF]  

Haluk Resat, Jonathan A. Ewald, David A. Dixon, and H. Steven Wiley

An Integrated Model of Epidermal Growth Factor Receptor Trafficking and Signal Transduction
Biophys. J. 2003 85: 730-743. [Abstract] [Full Text] [PDF]  

Mukund Thattai and Boris I. Shraiman

Metabolic Switching in the Sugar Phosphotransferase System of Escherichia coli
Biophys. J. 2003 85: 744-754. [Abstract] [Full Text] [PDF]  

Tom Chou

Ribosome Recycling, Diffusion, and mRNA Loop Formation in Translational Regulation
Biophys. J. 2003 85: 755-773. [Abstract] [Full Text] [PDF]  

Andrei Borodich, Igor Rojdestvenski, and Michael Cottam

Lateral Heterogeneity of Photosystems in Thylakoid Membranes Studied by Brownian Dynamics Simulations
Biophys. J. 2003 85: 774-789. [Abstract] [Full Text] [PDF]  

Eric J. Sorin, Young Min Rhee, Bradley J. Nakatani, and Vijay S. Pande

Insights into Nucleic Acid Conformational Dynamics from Massively Parallel Stochastic Simulations
Biophys. J. 2003 85: 790-803. [Abstract] [Full Text] [PDF]  

Jing Huang, Qing Zhang, and Tamar Schlick

Effect of DNA Superhelicity and Bound Proteins on Mechanistic Aspects of the Hin-Mediated and Fis-Enhanced Inversion
Biophys. J. 2003 85: 804-817. [Abstract] [Full Text] [PDF]  

Andrej Vilfan and Thomas Duke

Instabilities in the Transient Response of Muscle
Biophys. J. 2003 85: 818-827. [Abstract] [Full Text] [PDF]  

Charles W. Wolgemuth, Oleg Igoshin, and George Oster

The Motility of Mollicutes
Biophys. J. 2003 85: 828-842. [Abstract] [Full Text] [PDF] [Movies]  

Rüdiger Schmitt

Helix Rotation Model of the Flagellar Rotary Motor
Biophys. J. 2003 85: 843-852. [Abstract] [Full Text] [PDF]  

Nese Kurt, Turkan Haliloglu, and Celia A. Schiffer

Structure-Based Prediction of Potential Binding and Nonbinding Peptides to HIV-1 Protease
Biophys. J. 2003 85: 853-863. [Abstract] [Full Text] [PDF]  

Yujie Wu and Gregory A. Voth

A Computer Simulation Study of the Hydrated Proton in a Synthetic Proton Channel
Biophys. J. 2003 85: 864-875. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Frank Orlik, Christian Andersen, Christophe Danelon, Mathias Winterhalter, Markus Pajatsch, August Böck, and Roland Benz

CymA of Klebsiella oxytoca Outer Membrane: Binding of Cyclodextrins and Study of the Current Noise of the Open Channel
Biophys. J. 2003 85: 876-885. [Abstract] [Full Text] [PDF]  

Ran Friedman, Esther Nachliel, and Menachem Gutman

The Role of Small Intraprotein Cavities in the Catalytic Cycle of Bacteriorhodopsin
Biophys. J. 2003 85: 886-896. [Abstract] [Full Text] [PDF]  

Liviu Movileanu, Stephen Cheley, and Hagan Bayley

Partitioning of Individual Flexible Polymers into a Nanoscopic Protein Pore
Biophys. J. 2003 85: 897-910. [Abstract] [Full Text] [PDF] [Appendix]  

Sho-Ya Wang, Kaitlin Bonner, Corinna Russell, and Ging Kuo Wang

Tryptophan Scanning of D1S6 and D4S6 C-Termini in Voltage-Gated Sodium Channels
Biophys. J. 2003 85: 911-920. [Abstract] [Full Text] [PDF]  

George G. Rodney and Martin F. Schneider

Calmodulin Modulates Initiation but Not Termination of Spontaneous Ca²⁺ Sparks in Frog Skeletal Muscle
Biophys. J. 2003 85: 921-932. [Abstract] [Full Text] [PDF]  

Brian Cannon, Martin Hermansson, Sandor Györke, Pentti Somerharju, Jorma A. Virtanen, and Kwan Hon Cheng

Regulation of Calcium Channel Activity by Lipid Domain Formation in Planar Lipid Bilayers
Biophys. J. 2003 85: 933-942. [Abstract] [Full Text] [PDF]  

Howard S. Young, Leo G. Herbette, and Victor Skita

-Bungarotoxin Binding to Acetylcholine Receptor Membranes Studied by Low Angle X-Ray Diffraction
Biophys. J. 2003 85: 943-953. [Abstract] [Full Text] [PDF]  

Ulrich Zachariae, Volkhard Helms, and Harald Engelhardt

Multistep Mechanism of Chloride Translocation in a Strongly Anion-Selective Porin Channel
Biophys. J. 2003 85: 954-962. [Abstract] [Full Text] [PDF]  

Ivan Quesada, Wei-Chun Chin, and Pedro Verdugo

ATP-Independent Luminal Oscillations and Release of Ca²⁺ and H⁺ from Mast Cell Secretory Granules: Implications for Signal Transduction
Biophys. J. 2003 85: 963-970. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Marcela Giudici, Roberto Pascual, Laura de la Canal, Karola Pfüller, Uwe Pfüller, and José Villalaín

Interaction of Viscotoxins A₃ and B with Membrane Model Systems: Implications to Their Mechanism of Action
Biophys. J. 2003 85: 971-981. [Abstract] [Full Text] [PDF]  

Hans Binder and Göran Lindblom

Charge-Dependent Translocation of the Trojan Peptide Penetratin across Lipid Membranes
Biophys. J. 2003 85: 982-995. [Abstract] [Full Text] [PDF]  

Philipus J. Patty and Barbara J. Frisken

The Pressure-Dependence of the Size of Extruded Vesicles
Biophys. J. 2003 85: 996-1004. [Abstract] [Full Text] [PDF]  

Boris G. Dzikovski, Vsevolod A. Livshits, and Derek Marsh

Oxygen Permeation Profile in Lipid Membranes: Comparison with Transmembrane Polarity Profile
Biophys. J. 2003 85: 1005-1012. [Abstract] [Full Text] [PDF]  

Bernhard Steinbauer, Thomas Mehnert, and Klaus Beyer

Hydration and Lateral Organization in Phospholipid Bilayers Containing Sphingomyelin: A ²H-NMR Study
Biophys. J. 2003 85: 1013-1024. [Abstract] [Full Text] [PDF]  

Dieter Kurad, Gunnar Jeschke, and Derek Marsh

Lipid Membrane Polarity Profiles by High-Field EPR
Biophys. J. 2003 85: 1025-1033. [Abstract] [Full Text] [PDF]  

John R. Silvius

Fluorescence Energy Transfer Reveals Microdomain Formation at Physiological Temperatures in Lipid Mixtures Modeling the Outer Leaflet of the Plasma Membrane
Biophys. J. 2003 85: 1034-1045. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

E. Homsher, M. Nili, I. Y. Chen, and L. S. Tobacman

Regulatory Proteins Alter Nucleotide Binding to Acto-Myosin of Sliding Filaments in Motility Assays
Biophys. J. 2003 85: 1046-1052. [Abstract] [Full Text] [PDF]  

M. Nyitrai, W. F. Stafford, A. G. Szent-Györgyi, and M. A. Geeves

Ionic Interactions Play a Role in the Regulatory Mechanism of Scallop Heavy Meromyosin
Biophys. J. 2003 85: 1053-1062. [Abstract] [Full Text] [PDF]  

Hind A. AL-Khayat, Liam Hudson, Michael K. Reedy, Thomas C. Irving, and John M. Squire

Myosin Head Configuration in Relaxed Insect Flight Muscle: X-Ray Modeled Resting Cross-Bridges in a Pre-Powerstroke State Are Poised for Actin Binding
Biophys. J. 2003 85: 1063-1079. [Abstract] [Full Text] [PDF]  

David Novo, Marino DiFranco, and Julio L. Vergara

Comparison between the Predictions of Diffusion-Reaction Models and Localized Ca²⁺ Transients in Amphibian Skeletal Muscle Fibers
Biophys. J. 2003 85: 1080-1097. [Abstract] [Full Text] [PDF]  

M. Reconditi, N. Koubassova, M. Linari, I. Dobbie, T. Narayanan, O. Diat, G. Piazzesi, V. Lombardi, and M. Irving

The Conformation of Myosin Head Domains in Rigor Muscle Determined by X-Ray Interference
Biophys. J. 2003 85: 1098-1110. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Anas M. Ababneh, C. C. Large, and S. Georghiou

Solvation of Nucleosides in Aqueous Mixtures of Organic Solvents: Relevance to DNA Open Basepairs
Biophys. J. 2003 85: 1111-1127. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

J. Xu, A. B. Stickrath, P. Bhattacharya, J. Nees, G. Váró, J. R. Hillebrecht, L. Ren, and R. R. Birge

Direct Measurement of the Photoelectric Response Time of Bacteriorhodopsin via Electro-Optic Sampling
Biophys. J. 2003 85: 1128-1134. [Abstract] [Full Text] [PDF]  

PROTEINS:

Ritu Khurana, Cristian Ionescu-Zanetti, Maighdlin Pope, Jie Li, Liza Nielson, Marina Ramírez-Alvarado, Lynn Regan, Anthony L. Fink, and Sue A. Carter

A General Model for Amyloid Fibril Assembly Based on Morphological Studies Using Atomic Force Microscopy
Biophys. J. 2003 85: 1135-1144. [Abstract] [Full Text] [PDF]  

Yang Zhang, Andrzej Kolinski, and Jeffrey Skolnick

TOUCHSTONE II: A New Approach to Ab Initio Protein Structure Prediction
Biophys. J. 2003 85: 1145-1164. [Abstract] [Full Text] [PDF]  

Emanuela Occhipinti, Pier Luigi Martelli, Francesco Spinozzi, Federica Corsi, Cristina Formantici, Laura Molteni, Heintz Amenitsch, Paolo Mariani, Paolo Tortora, and Rita Casadio

3D Structure of Sulfolobus solfataricus Carboxypeptidase Developed by Molecular Modeling is Confirmed by Site-Directed Mutagenesis and Small Angle X-Ray Scattering
Biophys. J. 2003 85: 1165-1175. [Abstract] [Full Text] [PDF]  

Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, and Yutaka Akiyama

Molecular Dynamics Simulation of Dimeric and Monomeric Forms of Human Prion Protein: Insight into Dynamics and Properties
Biophys. J. 2003 85: 1176-1185. [Abstract] [Full Text] [PDF]  

Yasushi Imamoto, Chie Tamura, Hironari Kamikubo, and Mikio Kataoka

Concentration-Dependent Tetramerization of Bovine Visual Arrestin
Biophys. J. 2003 85: 1186-1195. [Abstract] [Full Text] [PDF]  

S. Noinville, F. Bruston, C. El Amri, D. Baron, and P. Nicolas

Conformation, Orientation, and Adsorption Kinetics of Dermaseptin B2 onto Synthetic Supports at Aqueous/Solid Interface
Biophys. J. 2003 85: 1196-1206. [Abstract] [Full Text] [PDF]  

Kresten Lindorff-Larsen, Emanuele Paci, Luis Serrano, Christopher M. Dobson, and Michele Vendruscolo

Calculation of Mutational Free Energy Changes in Transition States for Protein Folding
Biophys. J. 2003 85: 1207-1214. [Abstract] [Full Text] [PDF]  

Szabolcs Osváth and Martin Gruebele

Proline Can Have Opposite Effects on Fast and Slow Protein Folding Phases
Biophys. J. 2003 85: 1215-1222. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Y. Sun, X. Li, N. Düzgünes, Y. Takaoka, S. Ohi, and S. Hirota

The Shape Parameter of Liposomes and DNA-Lipid Complexes Determined by Viscometry Utilizing Small Sample Volumes
Biophys. J. 2003 85: 1223-1232. [Abstract] [Full Text] [PDF]  

Andre F. Palmer, Philip Wingert, and Jonathan Nickels

Atomic Force Microscopy and Light Scattering of Small Unilamellar Actin-Containing Liposomes
Biophys. J. 2003 85: 1233-1247. [Abstract] [Full Text] [PDF]  

M. Pasenkiewicz-Gierula, T. Róg, J. Grochowski, P. Serda, R. Czarnecki, T. Librowski, and S. Lochynski

Effects of a Carane Derivative Local Anesthetic on a Phospholipid Bilayer Studied by Molecular Dynamics Simulation
Biophys. J. 2003 85: 1248-1258. [Abstract] [Full Text] [PDF]  

S.C.M. Gandini, E.L. Gelamo, R. Itri, and M. Tabak

Small Angle X-Ray Scattering Study of Meso-Tetrakis (4-Sulfonatophenyl) Porphyrin in Aqueous Solution: A Self-Aggregation Model
Biophys. J. 2003 85: 1259-1268. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

S. E. Whitmire, D. Wolpert, A. G. Markelz, J. R. Hillebrecht, J. Galan, and R. R. Birge

Protein Flexibility and Conformational State: A Comparison of Collective Vibrational Modes of Wild-Type and D96N Bacteriorhodopsin
Biophys. J. 2003 85: 1269-1277. [Abstract] [Full Text] [PDF]  

Mingtao Ge, Arun Gidwani, H. Alex Brown, David Holowka, Barbara Baird, and Jack H. Freed

Ordered and Disordered Phases Coexist in Plasma Membrane Vesicles of RBL-2H3 Mast Cells. An ESR Study
Biophys. J. 2003 85: 1278-1288. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

P. Vallotton, A. Ponti, C. M. Waterman-Storer, E. D. Salmon, and G. Danuser

Recovery, Visualization, and Analysis of Actin and Tubulin Polymer Flow in Live Cells: A Fluorescent Speckle Microscopy Study
Biophys. J. 2003 85: 1289-1306. [Abstract] [Full Text] [PDF] [Movies]  

BIOENERGETICS:

Dmitry A. Cherepanov, Boris A. Feniouk, Wolfgang Junge, and Armen Y. Mulkidjanian

Low Dielectric Permittivity of Water at the Membrane Interface: Effect on the Energy Coupling Mechanism in Biological Membranes
Biophys. J. 2003 85: 1307-1316. [Abstract] [Full Text] [PDF]  

Kelly M. Halverson and Bridgette A. Barry

Sucrose and Glycerol Effects on Photosystem II
Biophys. J. 2003 85: 1317-1325. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

V. Carabelli, A. Giancippoli, P. Baldelli, E. Carbone, and A. R. Artalejo

Distinct Potentiation of L-Type Currents and Secretion by cAMP in Rat Chromaffin Cells
Biophys. J. 2003 85: 1326-1337. [Abstract] [Full Text] [PDF]  

CORRECTIONS:

Correction
Biophys. J. 2003 85: 1338(2) [Full Text] [PDF]  

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