BIOPHYSICAL THEORY AND MODELING:

Dmitry A. Cherepanov, Wolfgang Junge, and Armen Y. Mulkidjanian

Proton Transfer Dynamics at the Membrane/Water Interface: Dependence on the Fixed and Mobile pH Buffers, on the Size and Form of Membrane Particles, and on the Interfacial Potential Barrier
Biophys. J. 2004 86: 665-680. [Abstract] [Full Text] [PDF]  

In-Chul Yeh and Gerhard Hummer

Diffusion and Electrophoretic Mobility of Single-Stranded RNA from Molecular Dynamics Simulations
Biophys. J. 2004 86: 681-689. [Abstract] [Full Text] [PDF]  

Sameer Varma and Eric Jakobsson

Ionization States of Residues in OmpF and Mutants: Effects of Dielectric Constant and Interactions between Residues
Biophys. J. 2004 86: 690-704. [Abstract] [Full Text] [PDF]  

Christian Kandt, Jürgen Schlitter, and Klaus Gerwert

Dynamics of Water Molecules in the Bacteriorhodopsin Trimer in Explicit Lipid/Water Environment
Biophys. J. 2004 86: 705-717. [Abstract] [Full Text] [PDF]  

A. Halperin, A. Buhot, and E.B. Zhulina

Sensitivity, Specificity, and the Hybridization Isotherms of DNA Chips
Biophys. J. 2004 86: 718-730. [Abstract] [Full Text] [PDF]  

Jorge A. Vila, Héctor A. Baldoni, Daniel R. Ripoll, Avijit Ghosh, and Harold A. Scheraga

Polyproline II Helix Conformation in a Proline-Rich Environment: A Theoretical Study
Biophys. J. 2004 86: 731-742. [Abstract] [Full Text] [PDF]  

Guohui Li and Qiang Cui

Analysis of Functional Motions in Brownian Molecular Machines with an Efficient Block Normal Mode Approach: Myosin-II and Ca²⁺-ATPase
Biophys. J. 2004 86: 743-763. [Abstract] [Full Text] [PDF] [Supplemental Material]  

Lawrence C.-L. Lin and Frank L. H. Brown

Dynamics of Pinned Membranes with Application to Protein Diffusion on the Surface of Red Blood Cells
Biophys. J. 2004 86: 764-780. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Derek L. Beahm and James E. Hall

Opening Hemichannels in Nonjunctional Membrane Stimulates Gap Junction Formation
Biophys. J. 2004 86: 781-796. [Abstract] [Full Text] [PDF]  

Le Xu and Gerhard Meissner

Mechanism of Calmodulin Inhibition of Cardiac Sarcoplasmic Reticulum Ca²⁺ Release Channel (Ryanodine Receptor)
Biophys. J. 2004 86: 797-804. [Abstract] [Full Text] [PDF]  

Zhengchang Su, Richard L. Shoemaker, Richard B. Marchase, and J. Edwin Blalock

Ca²⁺ Modulation of Ca²⁺ Release-Activated Ca²⁺ Channels Is Responsible for the Inactivation of Its Monovalent Cation Current
Biophys. J. 2004 86: 805-814. [Abstract] [Full Text] [PDF]  

Christine Peinelt and Hans-Jürgen Apell

Time-Resolved Charge Movements in the Sarcoplasmatic Reticulum Ca-ATPase
Biophys. J. 2004 86: 815-824. [Abstract] [Full Text] [PDF]  

Gennady V. Miloshevsky and Peter C. Jordan

Anion Pathway and Potential Energy Profiles along Curvilinear Bacterial ClC Cl^- Pores: Electrostatic Effects of Charged Residues
Biophys. J. 2004 86: 825-835. [Abstract] [Full Text] [PDF]  

Jordi Cohen and Klaus Schulten

Mechanism of Anionic Conduction across ClC
Biophys. J. 2004 86: 836-845. [Abstract] [Full Text] [PDF]  

Ben Corry, Megan O'Mara, and Shin-Ho Chung

Conduction Mechanisms of Chloride Ions in ClC-Type Channels
Biophys. J. 2004 86: 846-860. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Marie-Cécile Giocondi, Pierre Emmanuel Milhiet, Patrice Dosset, and Christian Le Grimellec

Use of Cyclodextrin for AFM Monitoring of Model Raft Formation
Biophys. J. 2004 86: 861-869. [Abstract] [Full Text] [PDF]  

Marcel Benz, Thomas Gutsmann, Nianhuan Chen, Rafael Tadmor, and Jacob Israelachvili

Correlation of AFM and SFA Measurements Concerning the Stability of Supported Lipid Bilayers
Biophys. J. 2004 86: 870-879. [Abstract] [Full Text] [PDF]  

T. M. Okonogi and H. M. McConnell

Contrast Inversion in the Epifluorescence of Cholesterol-Phospholipid Monolayers
Biophys. J. 2004 86: 880-890. [Abstract] [Full Text] [PDF]  

Andrey Filippov, Greger Orädd, and Göran Lindblom

Lipid Lateral Diffusion in Ordered and Disordered Phases in Raft Mixtures
Biophys. J. 2004 86: 891-896. [Abstract] [Full Text] [PDF]  

Tim F. Alig, Heidi E. Warriner, Lily Lee, and Joseph A. Zasadzinski

Electrostatic Barrier to Recovery of Dipalmitoylphosphatidylglycerol Monolayers after Collapse
Biophys. J. 2004 86: 897-904. [Abstract] [Full Text] [PDF]  

Yoshihisa Kaizuka and Jay T. Groves

Structure and Dynamics of Supported Intermembrane Junctions
Biophys. J. 2004 86: 905-912. [Abstract] [Full Text] [PDF]  

Sven O. Hagge, Andre Wiese, Ulrich Seydel, and Thomas Gutsmann

Inner Field Compensation as a Tool for the Characterization of Asymmetric Membranes and Peptide-Membrane Interactions
Biophys. J. 2004 86: 913-922. [Abstract] [Full Text] [PDF]  

Mirkka Koivusalo, Joni Alvesalo, Jorma A. Virtanen, and Pentti Somerharju

Partitioning of Pyrene-Labeled Phospho- and Sphingolipids between Ordered and Disordered Bilayer Domains
Biophys. J. 2004 86: 923-935. [Abstract] [Full Text] [PDF]  

Lorenzo Stella, Claudia Mazzuca, Mariano Venanzi, Antonio Palleschi, Mara Didonè, Fernando Formaggio, Claudio Toniolo, and Basilio Pispisa

Aggregation and Water-Membrane Partition as Major Determinants of the Activity of the Antibiotic Peptide Trichogin GA IV
Biophys. J. 2004 86: 936-945. [Abstract] [Full Text] [PDF]  

Carla Matos, José L. C. Lima, Salette Reis, António Lopes, and Margarida Bastos

Interaction of Antiinflammatory Drugs with EPC Liposomes: Calorimetric Study in a Broad Concentration Range
Biophys. J. 2004 86: 946-954. [Abstract] [Full Text] [PDF]  

Winfried Römer and Claudia Steinem

Impedance Analysis and Single-Channel Recordings on Nano-Black Lipid Membranes Based on Porous Alumina
Biophys. J. 2004 86: 955-965. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Tony L. Creazzo, Jarrett Burch, and Robert E. Godt

Calcium Buffering and Excitation-Contraction Coupling in Developing Avian Myocardium
Biophys. J. 2004 86: 966-977. [Abstract] [Full Text] [PDF]  

Hunter Martin, Marcus G. Bell, Graham C. R. Ellis-Davies, and Robert J. Barsotti

Activation Kinetics of Skinned Cardiac Muscle by Laser Photolysis of Nitrophenyl-EGTA
Biophys. J. 2004 86: 978-990. [Abstract] [Full Text] [PDF]  

A. K. Burkeen, S. L. Maday, K. K. Rybicka, J. A. Sulcove, J. Ward, M. M. Huang, R. Barstead, C. Franzini-Armstrong,, and T. StC. Allen

Disruption of Caenorhabditis elegans Muscle Structure and Function Caused by Mutation of Troponin I
Biophys. J. 2004 86: 991-1001. [Abstract] [Full Text] [PDF]  

Donald A. Martyn, Bishow B. Adhikari, Michael Regnier, Jin Gu, Sengen Xu, and Leepo C. Yu

Response of Equatorial X-Ray Reflections and Stiffness to Altered Sarcomere Length and Myofilament Lattice Spacing in Relaxed Skinned Cardiac Muscle
Biophys. J. 2004 86: 1002-1011. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Jin-Ok Kim, Young-Ae Lee, Byeong Hwa Yun, Sung Wook Han, Sam Tag Kwag, and Seog K. Kim

Binding of meso-Tetrakis(N-methylpyridinium-4-yl)porphyrin to AT Oligomers: Effect of Chain Length and the Location of the Porphyrin Stacking
Biophys. J. 2004 86: 1012-1017. [Abstract] [Full Text] [PDF]  

Liming Ying, Samuel S. White, Andreas Bruckbauer, Lisa Meadows, Yuri E. Korchev, and David Klenerman

Frequency and Voltage Dependence of the Dielectrophoretic Trapping of Short Lengths of DNA and dCTP in a Nanopipette
Biophys. J. 2004 86: 1018-1027. [Abstract] [Full Text] [PDF]  

Binh Nguyen, Donald Hamelberg, Christian Bailly, Pierre Colson, Jaroslav Stanek, Reto Brun, Stephen Neidle, and W. David Wilson

Characterization of a Novel DNA Minor-Groove Complex
Biophys. J. 2004 86: 1028-1041. [Abstract] [Full Text] [PDF] [Supplemental Material]  

PHOTOBIOPHYSICS:

Koji Hasegawa, Yukihiro Kimura, and Taka-aki Ono

Oxidation of the Mn Cluster Induces Structural Changes of NO₃^- Functionally Bound to the Cl^- Site in the Oxygen-Evolving Complex of Photosystem II
Biophys. J. 2004 86: 1042-1050. [Abstract] [Full Text] [PDF]  

Aba Losi, Tilman Kottke, and Peter Hegemann

Recording of Blue Light-Induced Energy and Volume Changes within the Wild-Type and Mutated Phot-LOV1 Domain from Chlamydomonas reinhardtii
Biophys. J. 2004 86: 1051-1060. [Abstract] [Full Text] [PDF]  

Ruili Wang, Velautham Sivakumar, T. Wade Johnson, and Gary Hastings

FTIR Difference Spectroscopy in Combination with Isotope Labeling for Identification of the Carbonyl Modes of P700 and P700⁺ in Photosystem I
Biophys. J. 2004 86: 1061-1073. [Abstract] [Full Text] [PDF]  

PROTEINS:

A. E. Carlsson, M. A. Wear, and J. A. Cooper

End versus Side Branching by Arp2/3 Complex
Biophys. J. 2004 86: 1074-1081. [Abstract] [Full Text] [PDF]  

Xinguo Hong, Yu-Xiang Weng, and Ming Li

Determination of the Topological Shape of Integral Membrane Protein Light-Harvesting Complex LH2 from Photosynthetic Bacteria in the Detergent Solution by Small-Angle X-Ray Scattering
Biophys. J. 2004 86: 1082-1088. [Abstract] [Full Text] [PDF]  

Daphné Georlette, Vinciane Blaise, Fabrice Bouillenne, Benjamin Damien, Sigridur H. Thorbjarnardóttir, Eric Depiereux, Charles Gerday, Vladimir N. Uversky, and Georges Feller

Adenylation-Dependent Conformation and Unfolding Pathways of the NAD⁺-Dependent DNA Ligase from the Thermophile Thermus scotoductus
Biophys. J. 2004 86: 1089-1104. [Abstract] [Full Text] [PDF]  

Sangyoon Lee and Gregory S. Chirikjian

Interhelical Angle and Distance Preferences in Globular Proteins
Biophys. J. 2004 86: 1105-1117. [Abstract] [Full Text] [PDF]  

A. Bonincontro, S. Cinelli, G. Onori, and A. Stravato

Dielectric Behavior of Lysozyme and Ferricytochrome-c in Water/Ethylene-Glycol Solutions
Biophys. J. 2004 86: 1118-1123. [Abstract] [Full Text] [PDF]  

Tomohiro Kimura, Nobuyuki Matubayasi, and Masaru Nakahara

Side-Chain Conformational Thermodynamics of Aspartic Acid Residue in the Peptides and Achatin-I in Aqueous Solution
Biophys. J. 2004 86: 1124-1137. [Abstract] [Full Text] [PDF] [Supplemental Material]  

Piotr Dobryszycki, Robert Kolodziejczyk, Daniel Krowarsch, Jacek Gapinski, Andrzej Ozyhar, and Marian Kochman

Unfolding and Refolding of Juvenile Hormone Binding Protein
Biophys. J. 2004 86: 1138-1148. [Abstract] [Full Text] [PDF]  

Patrizia Cioni, Ellen de Waal, Gerard W. Canters, and Giovanni B. Strambini

Effects of Cavity-Forming Mutations on the Internal Dynamics of Azurin
Biophys. J. 2004 86: 1149-1159. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Ana Martin-Herranz, Ayesha Ahmad, Heather M. Evans, Kai Ewert, Uwe Schulze, and Cyrus R. Safinya

Surface Functionalized Cationic Lipid-DNA Complexes for Gene Delivery: PEGylated Lamellar Complexes Exhibit Distinct DNA-DNA Interaction Regimes
Biophys. J. 2004 86: 1160-1168. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Andrew C. Millard, Lei Jin, Mei-de Wei, Joseph P. Wuskell, Aaron Lewis, and Leslie M. Loew

Sensitivity of Second Harmonic Generation from Styryl Dyes to Transmembrane Potential
Biophys. J. 2004 86: 1169-1176. [Abstract] [Full Text] [PDF] [Supplemental Material]  

Lilia A. Chtcheglova, George T. Shubeita, Sergey K. Sekatskii, and Giovanni Dietler

Force Spectroscopy with a Small Dithering of AFM Tip: A Method of Direct and Continuous Measurement of the Spring Constant of Single Molecules and Molecular Complexes
Biophys. J. 2004 86: 1177-1184. [Abstract] [Full Text] [PDF]  

Raimund J. Ober, Sripad Ram, and E. Sally Ward

Localization Accuracy in Single-Molecule Microscopy
Biophys. J. 2004 86: 1185-1200. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

X.-X. Dong and K. H. Iwasa

Tension Sensitivity of Prestin: Comparison with the Membrane Motor in Outer Hair Cells
Biophys. J. 2004 86: 1201-1208. [Abstract] [Full Text] [PDF]  

Maureen A. Griffin, Adam J. Engler, Thomas A. Barber, Kevin E. Healy, H. Lee Sweeney, and Dennis E. Discher

Patterning, Prestress, and Peeling Dynamics of Myocytes
Biophys. J. 2004 86: 1209-1222. [Abstract] [Full Text] [PDF]  

Elena B. Lomakina and Richard E. Waugh

Micromechanical Tests of Adhesion Dynamics between Neutrophils and Immobilized ICAM-1
Biophys. J. 2004 86: 1223-1233. [Abstract] [Full Text] [PDF]  

Howard E. Davis, Matthew Rosinski, Jeffrey R. Morgan, and Martin L. Yarmush

Charged Polymers Modulate Retrovirus Transduction via Membrane Charge Neutralization and Virus Aggregation
Biophys. J. 2004 86: 1234-1242. [Abstract] [Full Text] [PDF]  

Gordon Zwartz, Alexandre Chigaev, Terry Foutz, Richard S. Larson, Richard Posner, and Larry A. Sklar

Relationship between Molecular and Cellular Dissociation Rates for VLA-4/VCAM-1 Interaction in the Absence of Shear Stress
Biophys. J. 2004 86: 1243-1252. [Abstract] [Full Text] [PDF]  

Christina Walters

Temperature Dependency of Molecular Mobility in Preserved Seeds
Biophys. J. 2004 86: 1253-1258. [Abstract] [Full Text] [PDF]  

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