BIOPHYSICAL LETTERS:

Kapil Mayawala, Claudio A. Gelmi, and Jeremy S. Edwards

MAPK Cascade Possesses Decoupled Controllability of Signal Amplification and Duration
Biophys. J. 2004 87: L1-L2; Published ahead of print on September 28, 2004 as doi:10.1529/biophysj.104.051888. [Abstract] [Full Text] [PDF] [supplemental file]  

BIOPHYSICAL THEORY AND MODELING:

Ellen F. Krasik and Daniel A. Hammer

A Semianalytic Model of Leukocyte Rolling
Biophys. J. 2004 87: 2919-2930; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.039693. [Abstract] [Full Text] [PDF]  

Jose A. Gascon and Victor S. Batista

QM/MM Study of Energy Storage and Molecular Rearrangements Due to the Primary Event in Vision
Biophys. J. 2004 87: 2931-2941; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.048264. [Abstract] [Full Text] [PDF]  

Marc Baaden and Mark S. P. Sansom

OmpT: Molecular Dynamics Simulations of an Outer Membrane Enzyme
Biophys. J. 2004 87: 2942-2953; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.046987. [Abstract] [Full Text] [PDF]  

Markus Dittrich, Shigehiko Hayashi, and Klaus Schulten

ATP Hydrolysis in the ß_TP and ß_DP Catalytic Sites of F₁-ATPase
Biophys. J. 2004 87: 2954-2967; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.046128. [Abstract] [Full Text] [PDF]  

Alessandro Flammini, Amos Maritan, and Andrzej Stasiak

Simulations of Action of DNA Topoisomerases to Investigate Boundaries and Shapes of Spaces of Knots
Biophys. J. 2004 87: 2968-2975; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.045864. [Abstract] [Full Text] [PDF]  

Perttu Niemelä, Marja T. Hyvönen, and Ilpo Vattulainen

Structure and Dynamics of Sphingomyelin Bilayer: Insight Gained through Systematic Comparison to Phosphatidylcholine
Biophys. J. 2004 87: 2976-2989; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.048702. [Abstract] [Full Text] [PDF] [supplemental file]  

Alexis Salas-Burgos, Pavel Iserovich, Felipe Zuniga, Juan Carlos Vera, and Jorge Fischbarg

Predicting the Three-Dimensional Structure of the Human Facilitative Glucose Transporter Glut1 by a Novel Evolutionary Homology Strategy: Insights on the Molecular Mechanism of Substrate Migration, and Binding Sites for Glucose and Inhibitory Molecules
Biophys. J. 2004 87: 2990-2999; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.047886. [Abstract] [Full Text] [PDF] [supplemental file]  

Chun Wu, Hongxing Lei, and Yong Duan

Formation of Partially Ordered Oligomers of Amyloidogenic Hexapeptide (NFGAIL) in Aqueous Solution Observed in Molecular Dynamics Simulations
Biophys. J. 2004 87: 3000-3009; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.047076. [Abstract] [Full Text] [PDF]  

S. Georgakopoulou, R. van Grondelle, and G. van der Zwan

Circular Dichroism of Carotenoids in Bacterial Light-Harvesting Complexes: Experiments and Modeling
Biophys. J. 2004 87: 3010-3022; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.047498. [Abstract] [Full Text] [PDF] [supplemental file]  

Sabine Becker-Weimann, Jana Wolf, Hanspeter Herzel, and Achim Kramer

Modeling Feedback Loops of the Mammalian Circadian Oscillator
Biophys. J. 2004 87: 3023-3034; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.040824. [Abstract] [Full Text] [PDF] [supplemental file]  

Wei Chen, Chia-En Chang, and Michael K. Gilson

Calculation of Cyclodextrin Binding Affinities: Energy, Entropy, and Implications for Drug Design
Biophys. J. 2004 87: 3035-3049; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.049494. [Abstract] [Full Text] [PDF]  

Marcos Sotomayor and Klaus Schulten

Molecular Dynamics Study of Gating in the Mechanosensitive Channel of Small Conductance MscS
Biophys. J. 2004 87: 3050-3065; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046045. [Abstract] [Full Text] [PDF] [supplemental file]  

Alexander Vologodskii

Computational Analysis of DNA Gyrase Action
Biophys. J. 2004 87: 3066-3073; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.042994. [Abstract] [Full Text] [PDF]  

Richard Bertram, Leslie Satin, Min Zhang, Paul Smolen, and Arthur Sherman

Calcium and Glycolysis Mediate Multiple Bursting Modes in Pancreatic Islets
Biophys. J. 2004 87: 3074-3087; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.049262. [Abstract] [Full Text] [PDF]  

Karunesh Arora and Tamar Schlick

In Silico Evidence for DNA Polymerase-ß's Substrate-Induced Conformational Change
Biophys. J. 2004 87: 3088-3099. [Abstract] [Full Text] [PDF] [Supplement]  

T. Herges and W. Wenzel

An All-Atom Force Field for Tertiary Structure Prediction of Helical Proteins
Biophys. J. 2004 87: 3100-3109. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

William R. Silverman, John P. A. Bannister, and Diane M. Papazian

Binding Site in Eag Voltage Sensor Accommodates a Variety of Ions and is Accessible in Closed Channel
Biophys. J. 2004 87: 3110-3121; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.044602. [Abstract] [Full Text] [PDF]  

Emil N. Nikolov and Tatyana T. Ivanova-Nikolova

Functional Characterization of a Small Conductance GIRK Channel in Rat Atrial Cells
Biophys. J. 2004 87: 3122-3136; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.103.039487. [Abstract] [Full Text] [PDF]  

Henk Miedema, Anita Meter-Arkema, Jenny Wierenga, John Tang, Bob Eisenberg, Wolfgang Nonner, Hans Hektor, Dirk Gillespie, and Wim Meijberg

Permeation Properties of an Engineered Bacterial OmpF Porin Containing the EEEE-Locus of Ca²⁺ Channels
Biophys. J. 2004 87: 3137-3147; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.041384. [Abstract] [Full Text] [PDF]  

Payam Andalib, Joseph F. Consiglio, Josef G. Trapani, and Stephen J. Korn

The External TEA Binding Site and C-Type Inactivation in Voltage-Gated Potassium Channels
Biophys. J. 2004 87: 3148-3161; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.046664. [Abstract] [Full Text] [PDF]  

Sergey M. Bezrukov, Oleg V. Krasilnikov, Liliya N. Yuldasheva, Alexander M. Berezhkovskii, and Claudio G. Rodrigues

Field-Dependent Effect of Crown Ether (18-Crown-6) on Ionic Conductance of -Hemolysin Channels
Biophys. J. 2004 87: 3162-3171. [Abstract] [Full Text] [PDF]  

Irene Iscla, Gal Levin, Robin Wray, Robert Reynolds, and Paul Blount

Defining the Physical Gate of a Mechanosensitive Channel, MscL, by Engineering Metal-Binding Sites
Biophys. J. 2004 87: 3172-3180; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.049833. [Abstract] [Full Text] [PDF]  

Omar Dafi, Laurent Berrou, Yolaine Dodier, Alexandra Raybaud, Rémy Sauvé, and Lucie Parent

Negatively Charged Residues in the N-terminal of the AID Helix Confer Slow Voltage Dependent Inactivation Gating to Ca_V1.2
Biophys. J. 2004 87: 3181-3192; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.045559. [Abstract] [Full Text] [PDF]  

Robert T. Dirksen and Guillermo Avila

Distinct Effects on Ca²⁺ Handling Caused by Malignant Hyperthermia and Central Core Disease Mutations in RyR1
Biophys. J. 2004 87: 3193-3204; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.048447. [Abstract] [Full Text] [PDF]  

Jérôme Mathé, Hasina Visram, Virgile Viasnoff, Yitzhak Rabin, and Amit Meller

Nanopore Unzipping of Individual DNA Hairpin Molecules
Biophys. J. 2004 87: 3205-3212; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.047274. [Abstract] [Full Text] [PDF] [supplemental file]  

MEMBRANES:

Frank Giess, Marcel G. Friedrich, Joachim Heberle, Renate L. Naumann, and Wolfgang Knoll

The Protein-Tethered Lipid Bilayer: A Novel Mimic of the Biological Membrane
Biophys. J. 2004 87: 3213-3220; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046169. [Abstract] [Full Text] [PDF]  

Jeffrey F. Ellena, Jason Moulthrop, Jing Wu, Michelle Rauch, Sajith Jaysinghne, J. David Castle, and David S. Cafiso

Membrane Position of a Basic Aromatic Peptide that Sequesters Phosphatidylinositol 4,5 Bisphosphate Determined by Site-Directed Spin Labeling and High-Resolution NMR
Biophys. J. 2004 87: 3221-3233; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.046748. [Abstract] [Full Text] [PDF] [supplemental file]  

Eugene J. Choi and Emilios K. Dimitriadis

Cytochrome c Adsorption to Supported, Anionic Lipid Bilayers Studied via Atomic Force Microscopy
Biophys. J. 2004 87: 3234-3241; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.047738. [Abstract] [Full Text] [PDF]  

J. Liam McWhirter, Gary Ayton, and Gregory A. Voth

Coupling Field Theory with Mesoscopic Dynamical Simulations of Multicomponent Lipid Bilayers
Biophys. J. 2004 87: 3242-3263; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.045716. [Abstract] [Full Text] [PDF]  

Ana Coutinho, Liana Silva, Alexander Fedorov, and Manuel Prieto

Cholesterol and Ergosterol Influence Nystatin Surface Aggregation: Relation to Pore Formation
Biophys. J. 2004 87: 3264-3276; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.044883. [Abstract] [Full Text] [PDF]  

K. Katsov, M. Müller, and M. Schick

Field Theoretic Study of Bilayer Membrane Fusion. I. Hemifusion Mechanism
Biophys. J. 2004 87: 3277-3290; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.103.038943. [Abstract] [Full Text] [PDF]  

R. M. Markosyan, P. Bates, F. S. Cohen, and G. B. Melikyan

A Study of Low pH-Induced Refolding of Env of Avian Sarcoma and Leukosis Virus into a Six-Helix Bundle
Biophys. J. 2004 87: 3291-3298; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.047696. [Abstract] [Full Text] [PDF]  

Gary S. Ayton and Gregory A. Voth

Mesoscopic Lateral Diffusion in Lipid Bilayers
Biophys. J. 2004 87: 3299-3311; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.047811. [Abstract] [Full Text] [PDF]  

Sagar A. Pandit, Eric Jakobsson, and H. L. Scott

Simulation of the Early Stages of Nano-Domain Formation in Mixed Bilayers of Sphingomyelin, Cholesterol, and Dioleylphosphatidylcholine
Biophys. J. 2004 87: 3312-3322; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046078. [Abstract] [Full Text] [PDF]  

Shuichi Toraya, Katsuyuki Nishimura, and Akira Naito

Dynamic Structure of Vesicle-Bound Melittin in a Variety of Lipid Chain Lengths by Solid-State NMR
Biophys. J. 2004 87: 3323-3335; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046102. [Abstract] [Full Text] [PDF]  

Fitzroy J. Byfield, Helim Aranda-Espinoza, Victor G. Romanenko, George H. Rothblat, and Irena Levitan

Cholesterol Depletion Increases Membrane Stiffness of Aortic Endothelial Cells
Biophys. J. 2004 87: 3336-3343; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.040634. [Abstract] [Full Text] [PDF]  

Anke Sieg, Richard H. Guy, and M. Begoña Delgado-Charro

Electroosmosis in Transdermal Iontophoresis: Implications for Noninvasive and Calibration-Free Glucose Monitoring
Biophys. J. 2004 87: 3344-3350; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.044792. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Thomas R. Shannon, Fei Wang, José Puglisi, Christopher Weber, and Donald M. Bers

A Mathematical Treatment of Integrated Ca Dynamics within the Ventricular Myocyte
Biophys. J. 2004 87: 3351-3371; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.047449. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

F. J. Solis, R. Bash, J. Yodh, S. M. Lindsay, and D. Lohr

A Statistical Thermodynamic Model Applied to Experimental AFM Population and Location Data Is Able to Quantify DNA-Histone Binding Strength and Internucleosomal Interaction Differences between Acetylated and Unacetylated Nucleosomal Arrays
Biophys. J. 2004 87: 3372-3387; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.103.034744. [Abstract] [Full Text] [PDF]  

U. Bockelmann, P. Thomen, and F. Heslot

Dynamics of the DNA Duplex Formation Studied by Single Molecule Force Measurements
Biophys. J. 2004 87: 3388-3396; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.039776. [Abstract] [Full Text] [PDF]  

Kamila Réblová, Nad'a Spacková, Jaroslav Koca, Neocles B. Leontis, and Jirí Sponer

Long-Residency Hydration, Cation Binding, and Dynamics of Loop E/Helix IV rRNA-L25 Protein Complex
Biophys. J. 2004 87: 3397-3412; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.047126. [Abstract] [Full Text] [PDF] [supplemental file]  

PHOTOBIOPHYSICS:

W. P. F. de Ruijter, S. Oellerich, J.-M. Segura, A. M. Lawless, M. Papiz, and T. J. Aartsma

Observation of the Energy-Level Structure of the Low-Light Adapted B800 LH4 Complex by Single-Molecule Spectroscopy
Biophys. J. 2004 87: 3413-3420; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.044719. [Abstract] [Full Text] [PDF]  

PROTEINS:

James D. Lear, Amanda L. Stouffer, Holly Gratkowski, Vikas Nanda, and William F. DeGrado

Association of a Model Transmembrane Peptide Containing Gly in a Heptad Sequence Motif
Biophys. J. 2004 87: 3421-3429; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.103.032839. [Abstract] [Full Text] [PDF]  

Bernie D. Sattin and M. Cynthia Goh

Direct Observation of the Assembly of RecA/DNA Complexes by Atomic Force Microscopy
Biophys. J. 2004 87: 3430-3436; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.045567. [Abstract] [Full Text] [PDF]  

Kristina Nilsson, Hans-Petter Hersleth, Thomas H. Rod, K. Kristoffer Andersson, and Ulf Ryde

The Protonation Status of Compound II in Myoglobin, Studied by a Combination of Experimental Data and Quantum Chemical Calculations: Quantum Refinement
Biophys. J. 2004 87: 3437-3447; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.041590. [Abstract] [Full Text] [PDF] [supplemental file]  

Sarel J. Fleishman, Susan Harrington, Richard A. Friesner, Barry Honig, and Nir Ben-Tal

An Automatic Method for Predicting Transmembrane Protein Structures Using Cryo-EM and Evolutionary Data
Biophys. J. 2004 87: 3448-3459; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046417. [Abstract] [Full Text] [PDF]  

Aaron K. Chamberlain and James U. Bowie

Analysis of Side-Chain Rotamers in Transmembrane Proteins
Biophys. J. 2004 87: 3460-3469; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.044024. [Abstract] [Full Text] [PDF] [supplemental file]  

Xiaohui Zhang, Susan E. Craig, Hishani Kirby, Martin J. Humphries, and Vincent T. Moy

Molecular Basis for the Dynamic Strength of the Integrin ₄ß₁/VCAM-1 Interaction
Biophys. J. 2004 87: 3470-3478; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.045690. [Abstract] [Full Text] [PDF]  

Amit Paliwal, Dilipkumar Asthagiri, Dobrin P. Bossev, and Michael E. Paulaitis

Pressure Denaturation of Staphylococcal Nuclease Studied by Neutron Small-Angle Scattering and Molecular Simulation
Biophys. J. 2004 87: 3479-3492; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.050526. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Günther Gerisch, Till Bretschneider, Annette Müller-Taubenberger, Evelyn Simmeth, Mary Ecke, Stefan Diez, and Kurt Anderson

Mobile Actin Clusters and Traveling Waves in Cells Recovering from Actin Depolymerization
Biophys. J. 2004 87: 3493-3503; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.047589. [Abstract] [Full Text] [PDF] [supplemental file]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Boris G. Dzikovski, Petr P. Borbat, and Jack H. Freed

Spin-Labeled Gramicidin A: Channel Formation and Dissociation
Biophys. J. 2004 87: 3504-3517; Published ahead of print on August 23, 2004 as doi:10.1529/biophysj.104.044305. [Abstract] [Full Text] [PDF]  

Matthias Weiss, Markus Elsner, Fredrik Kartberg, and Tommy Nilsson

Anomalous Subdiffusion Is a Measure for Cytoplasmic Crowding in Living Cells
Biophys. J. 2004 87: 3518-3524; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.044263. [Abstract] [Full Text] [PDF]  

Anatoli Ianoul, Melissa Street, Donna Grant, John Pezacki, Rod S. Taylor, and Linda J. Johnston

Near-Field Scanning Fluorescence Microscopy Study of Ion Channel Clusters in Cardiac Myocyte Membranes
Biophys. J. 2004 87: 3525-3535; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046383. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

A. J. Aranyosi and Dennis M. Freeman

Sound-Induced Motions of Individual Cochlear Hair Bundles
Biophys. J. 2004 87: 3536-3546; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.044404. [Abstract] [Full Text] [PDF] [supplemental file]  

Alina Hategan, Kheya Sengupta, Samuel Kahn, Erich Sackmann, and Dennis E. Discher

Topographical Pattern Dynamics in Passive Adhesion of Cell Membranes
Biophys. J. 2004 87: 3547-3560; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.041475. [Abstract] [Full Text] [PDF]  

Gaurav Girdhar and Jin-Yu Shao

Membrane Tether Extraction from Human Umbilical Vein Endothelial Cells and Its Implication in Leukocyte Rolling
Biophys. J. 2004 87: 3561-3568; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.047514. [Abstract] [Full Text] [PDF]  

Mark E. Bowen, Keith Weninger, Axel T. Brunger, and Steven Chu

Single Molecule Observation of Liposome-Bilayer Fusion Thermally Induced by Soluble N-Ethyl Maleimide Sensitive-Factor Attachment Protein Receptors (SNAREs)
Biophys. J. 2004 87: 3569-3584; Published ahead of print on September 3, 2004 as doi:10.1529/biophysj.104.048637. [Abstract] [Full Text] [PDF] [supplemental file]  

BIOENERGETICS:

Olga Vergun and Ian J. Reynolds

Fluctuations in Mitochondrial Membrane Potential in Single Isolated Brain Mitochondria: Modulation by Adenine Nucleotides and Ca²⁺
Biophys. J. 2004 87: 3585-3593; Published ahead of print on August 17, 2004 as doi:10.1529/biophysj.104.042671. [Abstract] [Full Text] [PDF]  

Michael J. Franklin, William S. A. Brusilow, and Dixon J. Woodbury

Determination of Proton Flux and Conductance at pH 6.8 through Single F_o Sectors from Escherichia coli
Biophys. J. 2004 87: 3594-3599; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.044248. [Abstract] [Full Text] [PDF]  

Teruhisa Hirai and Sriram Subramaniam

Structure and Transport Mechanism of the Bacterial Oxalate Transporter OxlT
Biophys. J. 2004 87: 3600-3607; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.049320. [Abstract] [Full Text] [PDF]  

OTHER:

Rouslan Efremov, Rouslan Moukhametzianov, Georg Büldt, and Valentin Gordeliy

Physical Detwinning of Hemihedrally Twinned Hexagonal Crystals of Bacteriorhodopsin
Biophys. J. 2004 87: 3608-3613; Published ahead of print on August 31, 2004 as doi:10.1529/biophysj.104.046573. [Abstract] [Full Text] [PDF]  

CORRECTIONS:

Correction
Biophys. J. 2004 87: 3614-3616. [Full Text] [PDF]  

Correction
Biophys. J. 2004 87: 3617(5) [Full Text] [PDF]  

Correction
Biophys. J. 2004 87: 3618(5) [Full Text] [PDF]  

Correction
Biophys. J. 2004 87: 3619(5) [Full Text] [PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.