Biophysical Journal -- Table of Contents (89 [2])

BIOPHYSICAL LETTERS:

Prithwish Pal, John F. Lesoine, M. Andreas Lieb, Lukas Novotny, and Philip A. Knauf: A Novel Immobilization Method for Single Protein spFRET Studies
Biophys. J. 2005 89: L11-L13; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.062794. [Abstract] [Full Text] [PDF] [Supplemental File]

Wanxin Sun, Pavel Neuzil, Tanu Suryadi Kustandi, Sharon Oh, and Victor D. Samper: The Nature of the Gecko Lizard Adhesive Force
Biophys. J. 2005 89: L14-L17; Published ahead of print on June 24, 2005 as doi:10.1529/biophysj.105.065268. [Abstract] [Full Text] [PDF]

BIOPHYSICAL THEORY AND MODELING:

Michael A. K. Liebschner, Ralph Müller, Sunil J. Wimalawansa, Chamith S. Rajapakse, and Gemunu H. Gunaratne: Testing Two Predictions for Fracture Load Using Computer Models of Trabecular Bone
Biophys. J. 2005 89: 759-767; Published ahead of print on May 6, 2005 as doi:10.1529/biophysj.104.057539. [Abstract] [Full Text] [PDF]

Ran Friedman, Esther Nachliel, and Menachem Gutman: Molecular Dynamics of a Protein Surface: Ion-Residues Interactions
Biophys. J. 2005 89: 768-781; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.058917. [Abstract] [Full Text] [PDF] [Supplemental File]

A. Mogilner and B. Rubinstein: The Physics of Filopodial Protrusion
Biophys. J. 2005 89: 782-795; Published ahead of print on May 6, 2005 as doi:10.1529/biophysj.104.056515. [Abstract] [Full Text] [PDF]

A. Halperin, A. Buhot, and E. B. Zhulina: Brush Effects on DNA Chips: Thermodynamics, Kinetics, and Design Guidelines
Biophys. J. 2005 89: 796-811; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.063479. [Abstract] [Full Text] [PDF]

Yuichi Sakumura, Yuki Tsukada, Nobuhiko Yamamoto, and Shin Ishii: A Molecular Model for Axon Guidance Based on Cross Talk between Rho GTPases
Biophys. J. 2005 89: 812-822; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.055624. [Abstract] [Full Text] [PDF]

S. A. Shkulipa, W. K. den Otter, and W. J. Briels: Surface Viscosity, Diffusion, and Intermonolayer Friction: Simulating Sheared Amphiphilic Bilayers
Biophys. J. 2005 89: 823-829; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.062653. [Abstract] [Full Text] [PDF]

Raffaele Borrelli, Mariangela Di Donato, and Andrea Peluso: Role of Intramolecular Vibrations in Long-Range Electron Transfer between Pheophytin and Ubiquinone in Bacterial Photosynthetic Reaction Centers
Biophys. J. 2005 89: 830-841; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.060574. [Abstract] [Full Text] [PDF]

Ana Caballero-Herrera, Kerstin Nordstrand, Kurt D. Berndt, and Lennart Nilsson: Effect of Urea on Peptide Conformation in Water: Molecular Dynamics and Experimental Characterization
Biophys. J. 2005 89: 842-857; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.061978. [Abstract] [Full Text] [PDF] [Supplemental File]

Manoj V. Athawale, Jonathan S. Dordick, and Shekhar Garde: Osmolyte Trimethylamine-N-Oxide Does Not Affect the Strength of Hydrophobic Interactions: Origin of Osmolyte Compatibility
Biophys. J. 2005 89: 858-866; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.056671. [Abstract] [Full Text] [PDF]

Dima Kozakov, Karl H. Clodfelter, Sandor Vajda, and Carlos J. Camacho: Optimal Clustering for Detecting Near-Native Conformations in Protein Docking
Biophys. J. 2005 89: 867-875; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.104.058768. [Abstract] [Full Text] [PDF]

Evelyn Koeche Schroeder, Luiz Augusto Basso, Diógenes Santiago Santos, and Osmar Norberto de Souza: Molecular Dynamics Simulation Studies of the Wild-Type, I21V, and I16T Mutants of Isoniazid-Resistant Mycobacterium tuberculosis Enoyl Reductase (InhA) in Complex with NADH: Toward the Understanding of NADH-InhA Different Affinities
Biophys. J. 2005 89: 876-884; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.104.053512. [Abstract] [Full Text] [PDF] [Supplemental File]

Dino G. Salinas, Milton De La Fuente, and Juan G. Reyes: Changes of Enzyme Activity in Lipid Signaling Pathways Related to Substrate Reordering
Biophys. J. 2005 89: 885-894; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.057307. [Abstract] [Full Text] [PDF]

Igor M. Sokolov, Ralf Metzler, Kiran Pant, and Mark C. Williams: Target Search of N Sliding Proteins on a DNA
Biophys. J. 2005 89: 895-902; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.104.057612. [Abstract] [Full Text] [PDF]

Monika Fuxreiter, Mihaly Mezei, István Simon, and Roman Osman: Interfacial Water as a "Hydration Fingerprint" in the Noncognate Complex of BamHI
Biophys. J. 2005 89: 903-911; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.063263. [Abstract] [Full Text] [PDF] [Supplemental File]

David Selmeczi, Stephan Mosler, Peter H. Hagedorn, Niels B. Larsen, and Henrik Flyvbjerg: Cell Motility as Persistent Random Motion: Theories from Experiments
Biophys. J. 2005 89: 912-931; Published ahead of print on June 10, 2005 as doi:10.1529/biophysj.105.061150. [Abstract] [Full Text] [PDF]

A. Giorgetti, P. Carloni, P. Mistrik, and V. Torre: A Homology Model of the Pore Region of HCN Channels
Biophys. J. 2005 89: 932-944; Published ahead of print on June 10, 2005 as doi:10.1529/biophysj.104.045286. [Abstract] [Full Text] [PDF] [Supplemental File]

Charles W. Wolgemuth: Force and Flexibility of Flailing Myxobacteria
Biophys. J. 2005 89: 945-950; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.062513. [Abstract] [Full Text] [PDF] [Supplemental File]

Nikolay M. Borisov, Nick I. Markevich, Jan B. Hoek, and Boris N. Kholodenko: Signaling through Receptors and Scaffolds: Independent Interactions Reduce Combinatorial Complexity
Biophys. J. 2005 89: 951-966; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.060533. [Abstract] [Full Text] [PDF] [Supplemental File]

Olli Punkkinen, Per Lyngs Hansen, Ling Miao, and Ilpo Vattulainen: DNA Overstretching Transition: Ionic Strength Effects
Biophys. J. 2005 89: 967-978; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.063099. [Abstract] [Full Text] [PDF]

Irina Baran: Gating Mechanisms of the Type-1 Inositol Trisphosphate Receptor
Biophys. J. 2005 89: 979-998; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.059238. [Abstract] [Full Text] [PDF]

Nuno M. Micaelo, Vitor H. Teixeira, António M. Baptista, and Cláudio M. Soares: Water Dependent Properties of Cutinase in Nonaqueous Solvents: A Computational Study of Enantioselectivity
Biophys. J. 2005 89: 999-1008; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.063297. [Abstract] [Full Text] [PDF]

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Carolina Oliva, Vivian González, and David Naranjo: Slow Inactivation in Voltage Gated Potassium Channels Is Insensitive to the Binding of Pore Occluding Peptide Toxins
Biophys. J. 2005 89: 1009-1019; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.060152. [Abstract] [Full Text] [PDF]

Iva Bruhova and Boris S. Zhorov: KvAP-Based Model of the Pore Region of Shaker Potassium Channel Is Consistent with Cadmium- and Ligand-Binding Experiments
Biophys. J. 2005 89: 1020-1029; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.062240. [Abstract] [Full Text] [PDF]

Liviu Movileanu, Jason P. Schmittschmitt, J. Martin Scholtz, and Hagan Bayley: Interactions of Peptides with a Protein Pore
Biophys. J. 2005 89: 1030-1045; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.057406. [Abstract] [Full Text] [PDF]

MEMBRANES:

Christian Horn and Claudia Steinem: Photocurrents Generated by Bacteriorhodopsin Adsorbed on Nano-Black Lipid Membranes
Biophys. J. 2005 89: 1046-1054; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.059550. [Abstract] [Full Text] [PDF] [Supplemental]

M. Abkarian and A. Viallat: Dynamics of Vesicles in a Wall-Bounded Shear Flow
Biophys. J. 2005 89: 1055-1066; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.056036. [Abstract] [Full Text] [PDF]

T. Baumgart, S. Das, W. W. Webb, and J. T. Jenkins: Membrane Elasticity in Giant Vesicles with Fluid Phase Coexistence
Biophys. J. 2005 89: 1067-1080; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.049692. [Abstract] [Full Text] [PDF]

A. R. Burns, D. J. Frankel, and T. Buranda: Local Mobility in Lipid Domains of Supported Bilayers Characterized by Atomic Force Microscopy and Fluorescence Correlation Spectroscopy
Biophys. J. 2005 89: 1081-1093; Published ahead of print on May 6, 2005 as doi:10.1529/biophysj.105.060327. [Abstract] [Full Text] [PDF]

A. Charrier and F. Thibaudau: Main Phase Transitions in Supported Lipid Single-Bilayer
Biophys. J. 2005 89: 1094-1101; Published ahead of print on May 6, 2005 as doi:10.1529/biophysj.105.062463. [Abstract] [Full Text] [PDF]

Adriana Vidal and Thomas J. McIntosh: Transbilayer Peptide Sorting between Raft and Nonraft Bilayers: Comparisons of Detergent Extraction and Confocal Microscopy
Biophys. J. 2005 89: 1102-1108; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.062380. [Abstract] [Full Text] [PDF]

Alekos Tsamaloukas, Halina Szadkowska, Peter J. Slotte, and Heiko Heerklotz: Interactions of Cholesterol with Lipid Membranes and Cyclodextrin Characterized by Calorimetry
Biophys. J. 2005 89: 1109-1119; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.061846. [Abstract] [Full Text] [PDF]

O. Soubias, F. Jolibois, S. Massou, A. Milon, and V. Réat: Determination of the Orientation and Dynamics of Ergosterol in Model Membranes Using Uniform ¹³C Labeling and Dynamically Averaged ¹³C Chemical Shift Anisotropies as Experimental Restraints
Biophys. J. 2005 89: 1120-1131; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.059857. [Abstract] [Full Text] [PDF]

MUSCLE AND CONTRACTILITY:

Margot E. Quinlan, Joseph N. Forkey, and Yale E. Goldman: Orientation of the Myosin Light Chain Region by Single Molecule Total Internal Reflection Fluorescence Polarization Microscopy
Biophys. J. 2005 89: 1132-1142; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.053496. [Abstract] [Full Text] [PDF] [Supplemental File]

Masako Kimura, Shigeru Takemori, Maki Yamaguchi, and Yoshiki Umazume: Differential Osmotic Behavior of Water Components in Living Skeletal Muscle Resolved by ¹H-NMR
Biophys. J. 2005 89: 1143-1149; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.059717. [Abstract] [Full Text] [PDF]

Naoto Yagi, Hiroyuki Iwamoto, Jun'ichi Wakayama, and Katsuaki Inoue: Structural Changes of Actin-Bound Myosin Heads after a Quick Length Change in Frog Skeletal Muscle
Biophys. J. 2005 89: 1150-1164; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.059089. [Abstract] [Full Text] [PDF]

Charles B. Lindemann, Lisa J. Macauley, and Kathleen A. Lesich: The Counterbend Phenomenon in Dynein-Disabled Rat Sperm Flagella and What It Reveals about the Interdoublet Elasticity
Biophys. J. 2005 89: 1165-1174; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.060681. [Abstract] [Full Text] [PDF]

PHOTOBIOPHYSICS:

Thorsten Fischer and Norbert A. Hampp: Two-Photon Absorption of Bacteriorhodopsin: Formation of a Red-Shifted Thermally Stable Photoproduct F₆₂₀
Biophys. J. 2005 89: 1175-1182; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.055806. [Abstract] [Full Text] [PDF]

PROTEINS:

Wenzhe Ma, Chao Tang, and Luhua Lai: Specificity of Trypsin and Chymotrypsin: Loop-Motion-Controlled Dynamic Correlation as a Determinant
Biophys. J. 2005 89: 1183-1193; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.057158. [Abstract] [Full Text] [PDF] [Supplemental File]

Wei Liu, Evan Crocker, Stefan N. Constantinescu, and Steven O. Smith: Helix Packing and Orientation in the Transmembrane Dimer of gp55-P of the Spleen Focus Forming Virus
Biophys. J. 2005 89: 1194-1202; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.057844. [Abstract] [Full Text] [PDF]

Shigenori Nagatomo, Masako Nagai, Yasuhisa Mizutani, Takashi Yonetani, and Teizo Kitagawa: Quaternary Structures of Intermediately Ligated Human Hemoglobin A and Influences from Strong Allosteric Effectors: Resonance Raman Investigation
Biophys. J. 2005 89: 1203-1213; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.049775. [Abstract] [Full Text] [PDF]

Göran Larsson, Jürgen Schleucher, Jacqueline Onions, Stefan Hermann, Thomas Grundström, and Sybren S. Wijmenga: Backbone Dynamics of a Symmetric Calmodulin Dimer in Complex with the Calmodulin-Binding Domain of the Basic-Helix-Loop-Helix Transcription Factor SEF2-1/E2-2: A Highly Dynamic Complex
Biophys. J. 2005 89: 1214-1226; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.055780. [Abstract] [Full Text] [PDF] [Supplemental File]

Roger Parker, Timothy R. Noel, Geoffrey J. Brownsey, Katrin Laos, and Stephen G. Ring: The Nonequilibrium Phase and Glass Transition Behavior of ß-Lactoglobulin
Biophys. J. 2005 89: 1227-1236; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.064246. [Abstract] [Full Text] [PDF]

SUPRAMOLECULAR ASSEMBLIES:

Maxim V. Petoukhov and Dmitri I. Svergun: Global Rigid Body Modeling of Macromolecular Complexes against Small-Angle Scattering Data
Biophys. J. 2005 89: 1237-1250; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.064154. [Abstract] [Full Text] [PDF]

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Santiago Costantino, Jonathan W. D. Comeau, David L. Kolin, and Paul W. Wiseman: Accuracy and Dynamic Range of Spatial Image Correlation and Cross-Correlation Spectroscopy
Biophys. J. 2005 89: 1251-1260; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.057364. [Abstract] [Full Text] [PDF] [Supplemental File]

Joseph N. Forkey, Margot E. Quinlan, and Yale E. Goldman: Measurement of Single Macromolecule Orientation by Total Internal Reflection Fluorescence Polarization Microscopy
Biophys. J. 2005 89: 1261-1271; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.053470. [Abstract] [Full Text] [PDF] [Supplemental File]

Seth Blumberg, Arivalagan Gajraj, Matthew W. Pennington, and Jens-Christian Meiners: Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy
Biophys. J. 2005 89: 1272-1281; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.061242. [Abstract] [Full Text] [PDF]

V. Kurkal, R. M. Daniel, John L. Finney, M. Tehei, R. V. Dunn, and Jeremy C. Smith: Enzyme Activity and Flexibility at Very Low Hydration
Biophys. J. 2005 89: 1282-1287; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.058677. [Abstract] [Full Text] [PDF]

Joseph P. Skinner, Yan Chen, and Joachim D. Müller: Position-Sensitive Scanning Fluorescence Correlation Spectroscopy
Biophys. J. 2005 89: 1288-1301; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.060749. [Abstract] [Full Text] [PDF]

Y. H. Sniekers and C. C. van Donkelaar: Determining Diffusion Coefficients in Inhomogeneous Tissues Using Fluorescence Recovery after Photobleaching
Biophys. J. 2005 89: 1302-1307; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.104.053652. [Abstract] [Full Text] [PDF]

Hanbin Mao, J. Ricardo Arias-Gonzalez, Steven B. Smith, Ignacio Tinoco, Jr., and Carlos Bustamante: Temperature Control Methods in a Laser Tweezers System
Biophys. J. 2005 89: 1308-1316; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.054536. [Abstract] [Full Text] [PDF]

Michelle A. Digman, Claire M. Brown, Parijat Sengupta, Paul W. Wiseman, Alan R. Horwitz, and Enrico Gratton: Measuring Fast Dynamics in Solutions and Cells with a Laser Scanning Microscope
Biophys. J. 2005 89: 1317-1327; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.062836. [Abstract] [Full Text] [PDF]

Daniel Hilger, Heinrich Jung, Etana Padan, Christoph Wegener, Klaus-Peter Vogel, Heinz-Jürgen Steinhoff, and Gunnar Jeschke: Assessing Oligomerization of Membrane Proteins by Four-Pulse DEER: pH-Dependent Dimerization of NhaA Na⁺/H⁺ Antiporter of E. coli
Biophys. J. 2005 89: 1328-1338; Published ahead of print on May 13, 2005 as doi:10.1529/biophysj.105.062232. [Abstract] [Full Text] [PDF]

Elmar Schmälzlin, Joost T. van Dongen, Ingo Klimant, Bettina Marmodée, Martin Steup, Joachim Fisahn, Peter Geigenberger, and Hans-Gerd Löhmannsröben: An Optical Multifrequency Phase-Modulation Method Using Microbeads for Measuring Intracellular Oxygen Concentrations in Plants
Biophys. J. 2005 89: 1339-1345. [Abstract] [Full Text] [PDF]

Marc Schneider, Sara Barozzi, Ilaria Testa, Mario Faretta, and Alberto Diaspro: Two-Photon Activation and Excitation Properties of PA-GFP in the 720–920-nm Region
Biophys. J. 2005 89: 1346-1352; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.104.054502. [Abstract] [Full Text] [PDF]

C. Bertocchi, A. Ravasio, S. Bernet, G. Putz, P. Dietl, and T. Haller: Optical Measurement of Surface Tension in a Miniaturized Air-Liquid Interface and its Application in Lung Physiology
Biophys. J. 2005 89: 1353-1361; Published ahead of print on June 10, 2005 as doi:10.1529/biophysj.104.053132. [Abstract] [Full Text] [PDF]

CELL BIOPHYSICS:

Galya Orr, Dehong Hu, Serdar Özçelik, Lee K. Opresko, H. Steven Wiley, and Steven D. Colson: Cholesterol Dictates the Freedom of EGF Receptors and HER2 in the Plane of the Membrane
Biophys. J. 2005 89: 1362-1373; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.104.056192. [Abstract] [Full Text] [PDF] [Supplemental File]

G. P. Raeber, M. P. Lutolf, and J. A. Hubbell: Molecularly Engineered PEG Hydrogels: A Novel Model System for Proteolytically Mediated Cell Migration
Biophys. J. 2005 89: 1374-1388; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.050682. [Abstract] [Full Text] [PDF]

Muhammad H. Zaman, Roger D. Kamm, Paul Matsudaira, and Douglas A. Lauffenburger: Computational Model for Cell Migration in Three-Dimensional Matrices
Biophys. J. 2005 89: 1389-1397; Published ahead of print on May 20, 2005 as doi:10.1529/biophysj.105.060723. [Abstract] [Full Text] [PDF]

J. Shawn Goodwin, Kimberly R. Drake, Catha L. Remmert, and Anne K. Kenworthy: Ras Diffusion Is Sensitive to Plasma Membrane Viscosity
Biophys. J. 2005 89: 1398-1410; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.055640. [Abstract] [Full Text] [PDF]

Anne Bernheim-Groswasser, Jacques Prost, and Cécile Sykes: Mechanism of Actin-Based Motility: A Dynamic State Diagram
Biophys. J. 2005 89: 1411-1419; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.104.055822. [Abstract] [Full Text] [PDF]

Ian C. Schneider, Elizabeth M. Parrish, and Jason M. Haugh: Spatial Analysis of 3' Phosphoinositide Signaling in Living Fibroblasts, III: Influence of Cell Morphology and Morphological Polarity
Biophys. J. 2005 89: 1420-1430; Published ahead of print on May 27, 2005 as doi:10.1529/biophysj.105.061218. [Abstract] [Full Text] [PDF] [Supplemental File]