Biophysical Journal -- Table of Contents (90 [10])

BIOPHYSICAL LETTERS:

Anh-Tuan Dinh, Chinmay Pangarkar, Theo Theofanous, and Samir Mitragotri: Theory of Spatial Patterns of Intracellular Organelles
Biophys. J. 2006 90: L67-L69; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.106.082875. [Abstract] [Full Text] [PDF] [Supplement]

V. Krishnan Ramanujan, Gabriel Biener, and Brian A. Herman: Scaling Behavior in Mitochondrial Redox Fluctuations
Biophys. J. 2006 90: L70-L72; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.106.083501. [Abstract] [Full Text] [PDF] [Supplement]

Hanning Chen, Yujie Wu, and Gregory A. Voth: Origins of Proton Transport Behavior from Selectivity Domain Mutations of the Aquaporin-1 Channel
Biophys. J. 2006 90: L73-L75; Published ahead of print on March 31, 2006 as doi:10.1529/biophysj.106.084061. [Abstract] [Full Text] [PDF]

BIOPHYSICAL THEORY AND MODELING:

Buyong Ma and Ruth Nussinov: The Stability of Monomeric Intermediates Controls Amyloid Formation: Aß25–35 and its N27Q Mutant
Biophys. J. 2006 90: 3365-3374; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.075309. [Abstract] [Full Text] [PDF]

Ivan Coluzza, Saskia M. van der Vies, and Daan Frenkel: Translocation Boost Protein-Folding Efficiency of Double-Barreled Chaperonins
Biophys. J. 2006 90: 3375-3381; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.074898. [Abstract] [Full Text] [PDF] [Supplement]

Dengming Ming and Rafael Brüschweiler: Reorientational Contact-Weighted Elastic Network Model for the Prediction of Protein Dynamics: Comparison with NMR Relaxation
Biophys. J. 2006 90: 3382-3388; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.071902. [Abstract] [Full Text] [PDF]

David E. Prosser, YuDing Guo, Zongchao Jia, and Glenville Jones: Structural Motif-Based Homology Modeling of CYP27A1 and Site-Directed Mutational Analyses Affecting Vitamin D Hydroxylation
Biophys. J. 2006 90: 3389-3409; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.069369. [Abstract] [Full Text] [PDF]

Changbong Hyeon and D. Thirumalai: Forced-Unfolding and Force-Quench Refolding of RNA Hairpins
Biophys. J. 2006 90: 3410-3427; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.078030. [Abstract] [Full Text] [PDF]

Marco Berrera, Sergio Pantano, and Paolo Carloni: cAMP Modulation of the Cytoplasmic Domain in the HCN2 Channel Investigated by Molecular Simulations
Biophys. J. 2006 90: 3428-3433; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.071621. [Abstract] [Full Text] [PDF] [Supplement]

Krasimira Tsaneva-Atanasova, Charles L. Zimliki, Richard Bertram, and Arthur Sherman: Diffusion of Calcium and Metabolites in Pancreatic Islets: Killing Oscillations with a Pitchfork
Biophys. J. 2006 90: 3434-3446; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.078360. [Abstract] [Full Text] [PDF]

Toby W. Allen, Olaf S. Andersen, and Benoit Roux: Ion Permeation through a Narrow Channel: Using Gramicidin to Ascertain All-Atom Molecular Dynamics Potential of Mean Force Methodology and Biomolecular Force Fields
Biophys. J. 2006 90: 3447-3468; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.077073. [Abstract] [Full Text] [PDF]

Achim Besser and Samuel A. Safran: Force-Induced Adsorption and Anisotropic Growth of Focal Adhesions
Biophys. J. 2006 90: 3469-3484; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.074377. [Abstract] [Full Text] [PDF]

Ghanim Ullah and Peter Jung: Modeling the Statistics of Elementary Calcium Release Events
Biophys. J. 2006 90: 3485-3495; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.073460. [Abstract] [Full Text] [PDF]

Marcos Sotomayor, Trudy A. van der Straaten, Umberto Ravaioli, and Klaus Schulten: Electrostatic Properties of the Mechanosensitive Channel of Small Conductance MscS
Biophys. J. 2006 90: 3496-3510; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.080069. [Abstract] [Full Text] [PDF] [Supplement]

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Yu-Kai The, Jacqueline Fernandes, M. Oana Popa, Alexi K. Alekov, Jens Timmer, and Holger Lerche: Modeling of Single Noninactivating Na⁺ Channels: Evidence for Two Open and Several Fast Inactivated States
Biophys. J. 2006 90: 3511-3522; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.073072. [Abstract] [Full Text] [PDF]

László Csanády: Statistical Evaluation of Ion-Channel Gating Models Based on Distributions of Log-Likelihood Ratios
Biophys. J. 2006 90: 3523-3545; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.075135. [Abstract] [Full Text] [PDF] [Supplement]

François M. Charron, Maxime G. Blanchard, and Jean-Yves Lapointe: Intracellular Hypertonicity Is Responsible for Water Flux Associated with Na⁺/Glucose Cotransport
Biophys. J. 2006 90: 3546-3554; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.076745. [Abstract] [Full Text] [PDF]

Steven A. Spronk, Donald E. Elmore, and Dennis A. Dougherty: Voltage-Dependent Hydration and Conduction Properties of the Hydrophobic Pore of the Mechanosensitive Channel of Small Conductance
Biophys. J. 2006 90: 3555-3569; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.080432. [Abstract] [Full Text] [PDF]

Liping He, Jerod Denton, Keith Nehrke, and Kevin Strange: Carboxy Terminus Splice Variation Alters ClC Channel Gating and Extracellular Cysteine Reactivity
Biophys. J. 2006 90: 3570-3581; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.078295. [Abstract] [Full Text] [PDF]

Henry Sackin, Mikheil Nanazashvili, Lawrence G. Palmer, and Hui Li: Role of Conserved Glycines in pH Gating of Kir1.1 (ROMK)
Biophys. J. 2006 90: 3582-3589; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.076653. [Abstract] [Full Text] [PDF]

Lie-Cheng Wang, Wei Xiong, Jing Zheng, Yang Zhou, Hui Zheng, Chen Zhang, Liang-Hong Zheng, Xue-Liang Zhu, Zhi-Qi Xiong, Lu-Yang Wang, He-Ping Cheng, and Zhuan Zhou: The Timing of Endocytosis after Activation of a G-Protein-Coupled Receptor in a Sensory Neuron
Biophys. J. 2006 90: 3590-3598. [Abstract] [Full Text] [PDF]

Anil V. Nair, Monica Mazzolini, Paolo Codega, Alejandro Giorgetti, and Vincent Torre: Locking CNGA1 Channels in the Open and Closed State
Biophys. J. 2006 90: 3599-3607; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.073346. [Abstract] [Full Text] [PDF]

MEMBRANES:

W. Frey, J. A. White, R. O. Price, P. F. Blackmore, R. P. Joshi, R. Nuccitelli, S. J. Beebe, K. H. Schoenbach, and J. F. Kolb: Plasma Membrane Voltage Changes during Nanosecond Pulsed Electric Field Exposure
Biophys. J. 2006 90: 3608-3615; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.072777. [Abstract] [Full Text] [PDF]

Ming Tang, Alan J. Waring, Robert I. Lehrer, and Mei Hong: Orientation of a ß-Hairpin Antimicrobial Peptide in Lipid Bilayers from Two-Dimensional Dipolar Chemical-Shift Correlation NMR
Biophys. J. 2006 90: 3616-3624; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.062075. [Abstract] [Full Text] [PDF]

Liana Silva, Ana Coutinho, Alexander Fedorov, and Manuel Prieto: Competitive Binding of Cholesterol and Ergosterol to the Polyene Antibiotic Nystatin. A Fluorescence Study
Biophys. J. 2006 90: 3625-3631; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.075408. [Abstract] [Full Text] [PDF]

Kaushik Nag, Kevin M. W. Keough, and Michael R. Morrow: Probing Perturbation of Bovine Lung Surfactant Extracts by Albumin using DSC and ²H-NMR
Biophys. J. 2006 90: 3632-3642; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.077370. [Abstract] [Full Text] [PDF]

MUSCLE AND CONTRACTILITY:

Mitsuhiro Iwaki, Hiroto Tanaka, Atsuko Hikikoshi Iwane, Eisaku Katayama, Mitsuo Ikebe, and Toshio Yanagida: Cargo-Binding Makes a Wild-Type Single-Headed Myosin-VI Move Processively
Biophys. J. 2006 90: 3643-3652; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.075721. [Abstract] [Full Text] [PDF] [Supplement]

V. B. Siththanandan, J. L. Donnelly, and M. A. Ferenczi: Effect of Strain on Actomyosin Kinetics in Isometric Muscle Fibers
Biophys. J. 2006 90: 3653-3665; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.072413. [Abstract] [Full Text] [PDF]

NUCLEIC ACIDS:

Ulrich Rant, Kenji Arinaga, Marc Tornow, Yong Woon Kim, Roland R. Netz, Shozo Fujita, Naoki Yokoyama, and Gerhard Abstreiter: Dissimilar Kinetic Behavior of Electrically Manipulated Single- and Double-Stranded DNA Tethered to a Gold Surface
Biophys. J. 2006 90: 3666-3671; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.078857. [Abstract] [Full Text] [PDF]

Meredith Newby Lambert, Eva Vöcker, Seth Blumberg, Stefanie Redemann, Arivalagan Gajraj, Jens-Christian Meiners, and Nils G. Walter: Mg²⁺-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy
Biophys. J. 2006 90: 3672-3685; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.067793. [Abstract] [Full Text] [PDF]

PHOTOBIOPHYSICS:

Javaid Shahbaz Khan, Yasushi Imamoto, Miki Harigai, Mikio Kataoka, and Masahide Terazima: Conformational Changes of PYP Monitored by Diffusion Coefficient: Effect of N-Terminal ${alpha}$ -Helices
Biophys. J. 2006 90: 3686-3693; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.078196. [Abstract] [Full Text] [PDF]

PROTEINS:

Simon F. Tolic-Nørrelykke, Mette B. Rasmussen, Francesco S. Pavone, Kirstine Berg-Sørensen, and Lene B. Oddershede: Stepwise Bending of DNA by a Single TATA-Box Binding Protein
Biophys. J. 2006 90: 3694-3703; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.074856. [Abstract] [Full Text] [PDF] [Supplement]

C. Duy and J. Fitter: How Aggregation and Conformational Scrambling of Unfolded States Govern Fluorescence Emission Spectra
Biophys. J. 2006 90: 3704-3711; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.078980. [Abstract] [Full Text] [PDF]

SUPRAMOLECULAR ASSEMBLIES:

Davide Marenduzzo, Cristian Micheletti, and Peter R. Cook: Entropy-Driven Genome Organization
Biophys. J. 2006 90: 3712-3721; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.077685. [Abstract] [Full Text] [PDF]

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Erin E. Wilson, Ayorinde Awonusi, Michael D. Morris, David H. Kohn, Mary M. J. Tecklenburg, and Larry W. Beck: Three Structural Roles for Water in Bone Observed by Solid-State NMR
Biophys. J. 2006 90: 3722-3731; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.070243. [Abstract] [Full Text] [PDF]

Kiyoshi Kawai, Toru Suzuki, and Masaharu Oguni: Low-Temperature Glass Transitions of Quenched and Annealed Bovine Serum Albumin Aqueous Solutions
Biophys. J. 2006 90: 3732-3738; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.075986. [Abstract] [Full Text] [PDF]

Itsushi Minoura and Etsuko Muto: Dielectric Measurement of Individual Microtubules Using the Electroorientation Method
Biophys. J. 2006 90: 3739-3748; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.071324. [Abstract] [Full Text] [PDF]

CELL BIOPHYSICS:

Hana El-Samad and Mustafa Khammash: Regulated Degradation Is a Mechanism for Suppressing Stochastic Fluctuations in Gene Regulatory Networks
Biophys. J. 2006 90: 3749-3761; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.060491. [Abstract] [Full Text] [PDF]

Sanjay Kumar, Iva Z. Maxwell, Alexander Heisterkamp, Thomas R. Polte, Tanmay P. Lele, Matthew Salanga, Eric Mazur, and Donald E. Ingber: Viscoelastic Retraction of Single Living Stress Fibers and Its Impact on Cell Shape, Cytoskeletal Organization, and Extracellular Matrix Mechanics
Biophys. J. 2006 90: 3762-3773; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.071506. [Abstract] [Full Text] [PDF] [Supplement]

Margo T. Frey, Irene Y. Tsai, Thomas P. Russell, Steven K. Hanks, and Yu-li Wang: Cellular Responses to Substrate Topography: Role of Myosin II and Focal Adhesion Kinase
Biophys. J. 2006 90: 3774-3782; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.074526. [Abstract] [Full Text] [PDF] [Supplement]

Matthew J. German, Azzedine Hammiche, Narasimhan Ragavan, Mark J. Tobin, Leanne J. Cooper, Shyam S. Matanhelia, Andrew C. Hindley, Caroline M. Nicholson, Nigel J. Fullwood, Hubert M. Pollock, and Francis L. Martin: Infrared Spectroscopy with Multivariate Analysis Potentially Facilitates the Segregation of Different Types of Prostate Cell
Biophys. J. 2006 90: 3783-3795; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.077255. [Abstract] [Full Text] [PDF] [Supplemental]

Pablo Fernández, Pramod A. Pullarkat, and Albrecht Ott: A Master Relation Defines the Nonlinear Viscoelasticity of Single Fibroblasts
Biophys. J. 2006 90: 3796-3805; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.072215. [Abstract] [Full Text] [PDF] [Supplement]

OTHER:

Kirstin A. Walther, Jasna Brujic, Hongbin Li, and Julio M. Fernández: Sub-Angstrom Conformational Changes of a Single Molecule Captured by AFM Variance Analysis
Biophys. J. 2006 90: 3806-3812; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.076224. [Abstract] [Full Text] [PDF]

Mamadou Diop and Rod Taylor: Soft Trapping and Manipulation of Cells Using a Disposable Nanoliter Biochamber
Biophys. J. 2006 90: 3813-3822; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.075614. [Abstract] [Full Text] [PDF]