BIOPHYSICAL LETTERS:

Daniel L. Cox, Rajiv R. P. Sing, and Sichun Yang

Prion Disease: Exponential Growth Requires Membrane Binding
Biophys. J. 2006 90: L77-L79; Published ahead of print on March 31, 2006 as doi:10.1529/biophysj.106.081703. [Abstract] [Full Text] [PDF]  

Dylan M. Owen, Peter M. P. Lanigan, Christopher Dunsby, Ian Munro, David Grant, Mark A. A. Neil, Paul M. W. French, and Anthony I. Magee

Fluorescence Lifetime Imaging Provides Enhanced Contrast when Imaging the Phase-Sensitive Dye di-4-ANEPPDHQ in Model Membranes and Live Cells
Biophys. J. 2006 90: L80-L82; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.084673. [Abstract] [Full Text] [PDF]  

Norbert Kucerka, Stephanie Tristram-Nagle, and John F. Nagle

Closer Look at Structure of Fully Hydrated Fluid Phase DPPC Bilayers
Biophys. J. 2006 90: L83-L85; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.086017. [Abstract] [Full Text] [PDF]  

Sapar M. Saparov, Yuri N. Antonenko, and Peter Pohl

A New Model of Weak Acid Permeation through Membranes Revisited: Does Overton Still Rule?
Biophys. J. 2006 90: L86-L88; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.106.084343. [Abstract] [Full Text] [PDF]  

NEW AND NOTABLE:

Anna Seelig

Unraveling Membrane-Mediated Substrate-Transporter Interactions
Biophys. J. 2006 90: 3825-3826; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.106.082008. [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

V. Barsegov, D. K. Klimov, and D. Thirumalai

Mapping the Energy Landscape of Biomolecules Using Single Molecule Force Correlation Spectroscopy: Theory and Applications
Biophys. J. 2006 90: 3827-3841; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.075937. [Abstract] [Full Text] [PDF]  

Elad Project, Ran Friedman, Esther Nachliel, and Menachem Gutman

A Molecular Dynamics Study of the Effect of Ca²⁺ Removal on Calmodulin Structure
Biophys. J. 2006 90: 3842-3850; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.077792. [Abstract] [Full Text] [PDF]  

M. Raible, M. Evstigneev, F. W. Bartels, R. Eckel, M. Nguyen-Duong, R. Merkel, R. Ros, D. Anselmetti, and P. Reimann

Theoretical Analysis of Single-Molecule Force Spectroscopy Experiments: Heterogeneity of Chemical Bonds
Biophys. J. 2006 90: 3851-3864; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.077099. [Abstract] [Full Text] [PDF]  

Nan-Jie Deng, Lisa Yan, Deepak Singh, and Piotr Cieplak

Molecular Basis for the Cu²⁺ Binding-Induced Destabilization of ß2-Microglobulin Revealed by Molecular Dynamics Simulation
Biophys. J. 2006 90: 3865-3879; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.064444. [Abstract] [Full Text] [PDF]  

Chia-En Chang, Tongye Shen, Joanna Trylska, Valentina Tozzini, and J. Andrew McCammon

Gated Binding of Ligands to HIV-1 Protease: Brownian Dynamics Simulations in a Coarse-Grained Model
Biophys. J. 2006 90: 3880-3885; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.074575. [Abstract] [Full Text] [PDF]  

Hiroshi Ishikita and Ernst-Walter Knapp

Function of Redox-Active Tyrosine in Photosystem II
Biophys. J. 2006 90: 3886-3896; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.076984. [Abstract] [Full Text] [PDF] [Supplemental]  

Daniel Fraiman, Bernardo Pando, Sheila Dargan, Ian Parker, and Silvina Ponce Dawson

Analysis of Puff Dynamics in Oocytes: Interdependence of Puff Amplitude and Interpuff Interval
Biophys. J. 2006 90: 3897-3907; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.075911. [Abstract] [Full Text] [PDF]  

Thomas Hirschberger, Martina Stork, Bernhard Schropp, Konstanze F. Winklhofer, Jörg Tatzelt, and Paul Tavan

Structural Instability of the Prion Protein upon M205S/R Mutations Revealed by Molecular Dynamics Simulations
Biophys. J. 2006 90: 3908-3918; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.075341. [Abstract] [Full Text] [PDF] [Supplemental]  

Nathan D. Price, Ines Thiele, and Bernhard Ø. Palsson

Candidate States of Helicobacter pylori's Genome-Scale Metabolic Network upon Application of "Loop Law" Thermodynamic Constraints
Biophys. J. 2006 90: 3919-3928; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.072645. [Abstract] [Full Text] [PDF] [Supplemental]  

Indira H. Shrivastava and Ivet Bahar

Common Mechanism of Pore Opening Shared by Five Different Potassium Channels
Biophys. J. 2006 90: 3929-3940; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.080093. [Abstract] [Full Text] [PDF] [Supplemental]  

Turgut Bastug and Serdar Kuyucak

Energetics of Ion Permeation, Rejection, Binding, and Block in Gramicidin A from Free Energy Simulations
Biophys. J. 2006 90: 3941-3950; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.074633. [Abstract] [Full Text] [PDF]  

Sukit Leekumjorn and Amadeu K. Sum

Molecular Simulation Study of Structural and Dynamic Properties of Mixed DPPC/DPPE Bilayers
Biophys. J. 2006 90: 3951-3965; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.076596. [Abstract] [Full Text] [PDF]  

G. Civelekoglu-Scholey, D. J. Sharp, A. Mogilner, and J. M. Scholey

Model of Chromosome Motility in Drosophila Embryos: Adaptation of a General Mechanism for Rapid Mitosis
Biophys. J. 2006 90: 3966-3982; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.078691. [Abstract] [Full Text] [PDF] [Supplemental]  

Yuguang Mu, Lars Nordenskiöld, and James P. Tam

Folding, Misfolding, and Amyloid Protofibril Formation of WW Domain FBP28
Biophys. J. 2006 90: 3983-3992; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.076406. [Abstract] [Full Text] [PDF]  

Harish Shankaran, H. Steven Wiley, and Haluk Resat

Modeling the Effects of HER/ErbB1-3 Coexpression on Receptor Dimerization and Biological Response
Biophys. J. 2006 90: 3993-4009; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.080580. [Abstract] [Full Text] [PDF]  

Y. Dehouck, D. Gilis, and M. Rooman

A New Generation of Statistical Potentials for Proteins
Biophys. J. 2006 90: 4010-4017; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.079434. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

S. M. Y. Makary, T. W. Claydon, K. M. Dibb, and M. R. Boyett

Base of Pore Loop Is Important for Rectification, Activation, Permeation, and Block of Kir3.1/Kir3.4
Biophys. J. 2006 90: 4018-4034; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.073569. [Abstract] [Full Text] [PDF]  

Daniella Muallem and Jonathan Ashmore

An Anion Antiporter Model of Prestin, the Outer Hair Cell Motor Protein
Biophys. J. 2006 90: 4035-4045; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.073254. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Hiroshi Omote and Marwan K. Al-Shawi

Interaction of Transported Drugs with the Lipid Bilayer and P-Glycoprotein through a Solvation Exchange Mechanism
Biophys. J. 2006 90: 4046-4059; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.077743. [Abstract] [Full Text] [PDF]  

Thomas Starke-Peterkovic, Nigel Turner, Mark F. Vitha, Mark P. Waller, David E. Hibbs, and Ronald J. Clarke

Cholesterol Effect on the Dipole Potential of Lipid Membranes
Biophys. J. 2006 90: 4060-4070; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.074666. [Abstract] [Full Text] [PDF]  

Marise Ouellet, Geneviève Bernard, Normand Voyer, and Michèle Auger

Insights on the Interactions of Synthetic Amphipathic Peptides with Model Membranes as Revealed by ³¹P and ²H Solid-State NMR and Infrared Spectroscopies
Biophys. J. 2006 90: 4071-4084; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.077339. [Abstract] [Full Text] [PDF]  

F.-Xabier Contreras, Jesús Sot, Alicia Alonso, and Félix M. Goñi

Sphingosine Increases the Permeability of Model and Cell Membranes
Biophys. J. 2006 90: 4085-4092; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.076471. [Abstract] [Full Text] [PDF]  

Galyna P. Gorbenko, Julian G. Molotkovsky, and Paavo K. J. Kinnunen

Cytochrome c Interaction with Cardiolipin/Phosphatidylcholine Model Membranes: Effect of Cardiolipin Protonation
Biophys. J. 2006 90: 4093-4103; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.080150. [Abstract] [Full Text] [PDF]  

Elizabeth J. Wallace, Nigel M. Hooper, and Peter D. Olmsted

Effect of Hydrophobic Mismatch on Phase Behavior of Lipid Membranes
Biophys. J. 2006 90: 4104-4118; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.062778. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Julian E. Stelzer, Daniel P. Fitzsimons, and Richard L. Moss

Ablation of Myosin-Binding Protein-C Accelerates Force Development in Mouse Myocardium
Biophys. J. 2006 90: 4119-4127; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.078147. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Ying Zhang, Valeria T. Milam, David J. Graves, and Daniel A. Hammer

Differential Adhesion of Microspheres Mediated by DNA Hybridization I: Experiment
Biophys. J. 2006 90: 4128-4136; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.072629. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Jennifer Riesz, Joel Gilmore, and Paul Meredith

Quantitative Scattering of Melanin Solutions
Biophys. J. 2006 90: 4137-4144; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.075713. [Abstract] [Full Text] [PDF]  

Ping Zuo, Bin-Xing Li, Xiao-Hui Zhao, Yi-Shi Wu, Xi-Cheng Ai, Jian-Ping Zhang, Liang-Bi Li, and Ting-Yun Kuang

Ultrafast Carotenoid-to-Chlorophyll Singlet Energy Transfer in the Cytochrome b₆f Complex from Bryopsis corticulans
Biophys. J. 2006 90: 4145-4154; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.076612. [Abstract] [Full Text] [PDF]  

PROTEINS:

Arwel V. Hughes, Paul Rees, Peter Heathcote, and Michael R. Jones

Kinetic Analysis of the Thermal Stability of the Photosynthetic Reaction Center from Rhodobacter sphaeroides
Biophys. J. 2006 90: 4155-4166; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.070029. [Abstract] [Full Text] [PDF]  

Manish C. Saraf, Gregory L. Moore, Nina M. Goodey, Vania Y. Cao, Stephen J. Benkovic, and Costas D. Maranas

IPRO: An Iterative Computational Protein Library Redesign and Optimization Procedure
Biophys. J. 2006 90: 4167-4180; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.079277. [Abstract] [Full Text] [PDF]  

Jesper Søndergaard Pedersen, James M. Flink, Dantcho Dikov, and Daniel Erik Otzen

Sulfates Dramatically Stabilize a Salt-Dependent Type of Glucagon Fibrils
Biophys. J. 2006 90: 4181-4194; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.070912. [Abstract] [Full Text] [PDF] [Supplemental]  

Mohammad Delawar Hossain, Shou Furuike, Yasushi Maki, Kengo Adachi, M. Yusuf Ali, Mominul Huq, Hiroyasu Itoh, Masasuke Yoshida, and Kazuhiko Kinosita, Jr.

The Rotor Tip Inside a Bearing of a Thermophilic F₁-ATPase Is Dispensable for Torque Generation
Biophys. J. 2006 90: 4195-4203. [Abstract] [Full Text] [PDF]  

Simone Melchionna, Raffaele Sinibaldi, and Giuseppe Briganti

Explanation of the Stability of Thermophilic Proteins Based on Unique Micromorphology
Biophys. J. 2006 90: 4204-4212; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.078972. [Abstract] [Full Text] [PDF]  

David L. Stokes, Andrew J. Pomfret, William J. Rice, John Paul Glaves, and Howard S. Young

Interactions between Ca²⁺-ATPase and the Pentameric Form of Phospholamban in Two-Dimensional Co-Crystals
Biophys. J. 2006 90: 4213-4223; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.079640. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING OTHER TECHNIQUES:

Sergey Yeremenko, Ivo H. M. van Stokkum, Keith Moffat, and Klaas J. Hellingwerf

Influence of the Crystalline State on Photoinduced Dynamics of Photoactive Yellow Protein Studied by Ultraviolet-Visible Transient Absorption Spectroscopy
Biophys. J. 2006 90: 4224-4235; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.074765. [Abstract] [Full Text] [PDF]  

Liyun Lin, Hongda Wang, Yan Liu, Hao Yan, and Stuart Lindsay

Recognition Imaging with a DNA Aptamer
Biophys. J. 2006 90: 4236-4238; Published ahead of print on March 2, 2006 as doi:10.1529/biophysj.105.079111. [Abstract] [Full Text] [PDF]  

Marco De Spirito, Roberto Brunelli, Giampiero Mei, Francesca R. Bertani, Gabriele Ciasca, Giulia Greco, Massimiliano Papi, Giuseppe Arcovito, Fulvio Ursini, and Tiziana Parasassi

Low Density Lipoprotein Aged in Plasma Forms Clusters Resembling Subendothelial Droplets: Aggregation via Surface Sites
Biophys. J. 2006 90: 4239-4247; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.075788. [Abstract] [Full Text] [PDF]  

Gregory P. Holland, Sarah K. McIntyre, and Todd M. Alam

Distinguishing Individual Lipid Headgroup Mobility and Phase Transitions in Raft-Forming Lipid Mixtures with ³¹P MAS NMR
Biophys. J. 2006 90: 4248-4260; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.077289. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Nikola Kojic, Milos Kojic, and Daniel J. Tschumperlin

Computational Modeling of Extracellular Mechanotransduction
Biophys. J. 2006 90: 4261-4270; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.105.078345. [Abstract] [Full Text] [PDF]  

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