Biophysical Journal -- Table of Contents (90 [4])

BIOPHYSICAL LETTERS:

Nikki Strickland, Adrian J. Mulholland, and Jeremy N. Harvey: The Fe-CO Bond Energy in Myoglobin: A QM/MM Study of the Effect of Tertiary Structure
Biophys. J. 2006 90: L27-L29; Published ahead of print on December 30, 2005 as doi:10.1529/biophysj.105.078097. [Abstract] [Full Text] [PDF] [Supplemental]

Lewyn Li, Svava Wetzel, Andreas Plückthun, and Julio M. Fernandez: Stepwise Unfolding of Ankyrin Repeats in a Single Protein Revealed by Atomic Force Microscopy
Biophys. J. 2006 90: L30-L32; Published ahead of print on December 30, 2005 as doi:10.1529/biophysj.105.078436. [Abstract] [Full Text] [PDF] [Supplemental]

Michael Schlierf and Matthias Rief: Single-Molecule Unfolding Force Distributions Reveal a Funnel-Shaped Energy Landscape
Biophys. J. 2006 90: L33-L35; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.077982. [Abstract] [Full Text] [PDF] [Supplemental]

Matthias Buck, Sabine Bouguet-Bonnet, Richard W. Pastor, and Alexander D. MacKerell, Jr.: Importance of the CMAP Correction to the CHARMM22 Protein Force Field: Dynamics of Hen Lysozyme
Biophys. J. 2006 90: L36-L38; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.078154. [Abstract] [Full Text] [PDF] [Supplemental]

BIOPHYSICAL THEORY AND MODELING:

Michael Patra, Emppu Salonen, Emma Terama, Ilpo Vattulainen, Roland Faller, Bryan W. Lee, Juha Holopainen, and Mikko Karttunen: Under the Influence of Alcohol: The Effect of Ethanol and Methanol on Lipid Bilayers
Biophys. J. 2006 90: 1121-1135; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.062364. [Abstract] [Full Text] [PDF]

Amit Mehra and Vassily Hatzimanikatis: An Algorithmic Framework for Genome-Wide Modeling and Analysis of Translation Networks
Biophys. J. 2006 90: 1136-1146; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.062521. [Abstract] [Full Text] [PDF]

J. Reidl, P. Borowski, A. Sensse, J. Starke, M. Zapotocky, and M. Eiswirth: Model of Calcium Oscillations Due to Negative Feedback in Olfactory Cilia
Biophys. J. 2006 90: 1147-1155; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.104.058545. [Abstract] [Full Text] [PDF]

Jonathan Bronson, One-Sun Lee, and Jeffery G. Saven: Molecular Dynamics Simulation of WSK-3, a Computationally Designed, Water-Soluble Variant of the Integral Membrane Protein KcsA
Biophys. J. 2006 90: 1156-1163; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.068965. [Abstract] [Full Text] [PDF]

Hao Cheng, Kai Zhang, Joseph A. Libera, Monica Olvera de la Cruz, and Michael J. Bedzyk: Polynucleotide Adsorption to Negatively Charged Surfaces in Divalent Salt Solutions
Biophys. J. 2006 90: 1164-1174. [Abstract] [Full Text] [PDF]

Zhi-Jie Tan and Shi-Jie Chen: Nucleic Acid Helix Stability: Effects of Salt Concentration, Cation Valence and Size, and Chain Length
Biophys. J. 2006 90: 1175-1190; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.070904. [Abstract] [Full Text] [PDF]

David R. Nutt and Markus Meuwly: Studying Reactive Processes with Classical Dynamics: Rebinding Dynamics in MbNO
Biophys. J. 2006 90: 1191-1201; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.071522. [Abstract] [Full Text] [PDF]

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Maarten Vrouenraets, Jenny Wierenga, Wim Meijberg, and Henk Miedema: Chemical Modification of the Bacterial Porin OmpF: Gain of Selectivity by Volume Reduction
Biophys. J. 2006 90: 1202-1211; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.072298. [Abstract] [Full Text] [PDF]

Daniel C. H. Kwan, David Fedida, and Steven J. Kehl: Single Channel Analysis Reveals Different Modes of Kv1.5 Gating Behavior Regulated by Changes of External pH
Biophys. J. 2006 90: 1212-1222; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.068577. [Abstract] [Full Text] [PDF]

Earl Gordon, Torsten K. Roepke, and Geoffrey W. Abbott: Endogenous KCNE Subunits Govern Kv2.1 K⁺ Channel Activation Kinetics in Xenopus Oocyte Studies
Biophys. J. 2006 90: 1223-1231; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.072504. [Abstract] [Full Text] [PDF]

Jérôme Hénin, Bernard Maigret, Mounir Tarek, Chantal Escrieut, Daniel Fourmy, and Christophe Chipot: Probing a Model of a GPCR/Ligand Complex in an Explicit Membrane Environment: The Human Cholecystokinin-1 Receptor
Biophys. J. 2006 90: 1232-1240; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.070599. [Abstract] [Full Text] [PDF]

MEMBRANES:

Chiho Hamai, Tinglu Yang, Sho Kataoka, Paul S. Cremer, and Siegfried M. Musser: Effect of Average Phospholipid Curvature on Supported Bilayer Formation on Glass by Vesicle Fusion
Biophys. J. 2006 90: 1241-1248; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.069435. [Abstract] [Full Text] [PDF]

William J. Gibbons, Jr., Ethan S. Karp, Nick A. Cellar, Robert E. Minto, and Gary A. Lorigan: Solid-State NMR Studies of a Diverged Microsomal Amino-Proximate ${Delta}$ 12 Desaturase Peptide Reveal Causes of Stability in Bilayer: Tyrosine Anchoring and Arginine Snorkeling
Biophys. J. 2006 90: 1249-1259; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.067884. [Abstract] [Full Text] [PDF] [Supplemental]

Silvia Milani, Francesca Baldelli Bombelli, Debora Berti, Thomas Hauß, Silvia Dante, and Piero Baglioni: Structural Investigation of Bilayers Formed by 1-Palmitoyl-2-Oleoylphosphatidylnucleosides
Biophys. J. 2006 90: 1260-1269; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.067645. [Abstract] [Full Text] [PDF]

TaeWoon Cha, Athena Guo, and X.-Y. Zhu: Formation of Supported Phospholipid Bilayers on Molecular Surfaces: Role of Surface Charge Density and Electrostatic Interaction
Biophys. J. 2006 90: 1270-1274. [Abstract] [Full Text] [PDF]

Frances Neville, Marjolaine Cahuzac, Oleg Konovalov, Yuji Ishitsuka, Ka Yee C. Lee, Ivan Kuzmenko, Girish M. Kale, and David Gidalevitz: Lipid Headgroup Discrimination by Antimicrobial Peptide LL-37: Insight into Mechanism of Action
Biophys. J. 2006 90: 1275-1287; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.067595. [Abstract] [Full Text] [PDF]

MUSCLE AND CONTRACTILITY:

Kenneth S. Campbell: Tension Recovery in Permeabilized Rat Soleus Muscle Fibers after Rapid Shortening and Restretch
Biophys. J. 2006 90: 1288-1294; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.067504. [Abstract] [Full Text] [PDF]

Yasuharu Takagi, Earl E. Homsher, Yale E. Goldman, and Henry Shuman: Force Generation in Single Conventional Actomyosin Complexes under High Dynamic Load
Biophys. J. 2006 90: 1295-1307; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.068429. [Abstract] [Full Text] [PDF] [Supplemental]

Weizu Chen, Kuo-Kuang Wen, Ashley E. Sens, and Peter A. Rubenstein: Differential Interaction of Cardiac, Skeletal Muscle, and Yeast Tropomyosins with Fluorescent (Pyrene²³⁵) Yeast Actin
Biophys. J. 2006 90: 1308-1318; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.064634. [Abstract] [Full Text] [PDF]

NUCLEIC ACIDS:

Binh Nguyen, Jaroslav Stanek, and W. David Wilson: Binding-Linked Protonation of a DNA Minor-Groove Agent
Biophys. J. 2006 90: 1319-1328; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.071381. [Abstract] [Full Text] [PDF] [Supplemental]

Anjana Sen and Peter E. Nielsen: Unique Properties of Purine/Pyrimidine Asymmetric PNA·DNA Duplexes: Differential Stabilization of PNA·DNA Duplexes by Purines in the PNA Strand
Biophys. J. 2006 90: 1329-1337; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.073213. [Abstract] [Full Text] [PDF] [Supplemental]

Christopher M. Barbieri and Daniel S. Pilch: Complete Thermodynamic Characterization of the Multiple Protonation Equilibria of the Aminoglycoside Antibiotic Paromomycin: A Calorimetric and Natural Abundance ¹⁵N NMR Study
Biophys. J. 2006 90: 1338-1349; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.075028. [Abstract] [Full Text] [PDF] [Supplemental]

PROTEINS:

Francesca Bernardi, Elena Gaggelli, Elena Molteni, Elena Porciatti, Daniela Valensin, and Gianni Valensin: ¹H and ¹³C-NMR and Molecular Dynamics Studies of Cyclosporin A Interacting with Magnesium(II) or Cerium(III) in Acetonitrile. Conformational Changes and cis-trans Conversion of Peptide Bonds
Biophys. J. 2006 90: 1350-1361; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.074245. [Abstract] [Full Text] [PDF]

Eitan Gross, Dao-Quan Peng, Stanley L. Hazen, and Jonathan D. Smith: A Novel Folding Intermediate State for Apolipoprotein A-I: Role of the Amino and Carboxy Termini
Biophys. J. 2006 90: 1362-1370; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.075069. [Abstract] [Full Text] [PDF]

SUPRAMOLECULAR ASSEMBLIES:

Victor F. Waingeh, Carol D. Gustafson, Evguenii I. Kozliak, Stephen L. Lowe, Harvey R. Knull, and Kathryn A. Thomasson: Glycolytic Enzyme Interactions with Yeast and Skeletal Muscle F-Actin
Biophys. J. 2006 90: 1371-1384; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.070052. [Abstract] [Full Text] [PDF]

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Marco V. Bayas, Andrew Leung, Evan Evans, and Deborah Leckband: Lifetime Measurements Reveal Kinetic Differences between Homophilic Cadherin Bonds
Biophys. J. 2006 90: 1385-1395; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.069583. [Abstract] [Full Text] [PDF] [Supplemental][Supplemental]

J. L. Swift, R. Heuff, and D. T. Cramb: A Two-Photon Excitation Fluorescence Cross-Correlation Assay for a Model Ligand-Receptor Binding System Using Quantum Dots
Biophys. J. 2006 90: 1396-1410; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.069526. [Abstract] [Full Text] [PDF] [Supplemental]

Georg E. Fantner, Emin Oroudjev, Georg Schitter, Laura S. Golde, Philipp Thurner, Marquesa M. Finch, Patricia Turner, Thomas Gutsmann, Daniel E. Morse, Helen Hansma, and Paul K. Hansma: Sacrificial Bonds and Hidden Length: Unraveling Molecular Mesostructures in Tough Materials
Biophys. J. 2006 90: 1411-1418; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.069344. [Abstract] [Full Text] [PDF]

Emmanuel Margeat, Achillefs N. Kapanidis, Philip Tinnefeld, You Wang, Jayanta Mukhopadhyay, Richard H. Ebright, and Shimon Weiss: Direct Observation of Abortive Initiation and Promoter Escape within Single Immobilized Transcription Complexes
Biophys. J. 2006 90: 1419-1431; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.069252. [Abstract] [Full Text] [PDF]

CELL BIOPHYSICS:

Patrick F. Dillon, Robert S. Root-Bernstein, and Charles M. Lieder: Molecular Shielding of Electric Field Complex Dissociation
Biophys. J. 2006 90: 1432-1438; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.071969. [Abstract] [Full Text] [PDF]

M. Machacek and G. Danuser: Morphodynamic Profiling of Protrusion Phenotypes
Biophys. J. 2006 90: 1439-1452; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.070383. [Abstract] [Full Text] [PDF] [Supplemental]

BIOENERGETICS:

Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt, and Vassily Hatzimanikatis: Genome-Scale Thermodynamic Analysis of Escherichia coli Metabolism
Biophys. J. 2006 90: 1453-1461; Published ahead of print on November 18, 2005 as doi:10.1529/biophysj.105.071720. [Abstract] [Full Text] [PDF] [Supplemental]