BIOPHYSICAL LETTERS:

Stephen W. Jones and David D. Friel

The Amplitude Distribution of Release Events through a Fusion Pore
Biophys. J. 2006 90: L39-L41; Published ahead of print on January 13, 2006 as doi:10.1529/biophysj.105.078881. [Abstract] [Full Text] [PDF] [Supplemental]  

Rajan P. Kulkarni, Kenneth Castelino, Arun Majumdar, and Scott E. Fraser

Intracellular Transport Dynamics of Endosomes Containing DNA Polyplexes along the Microtubule Network
Biophys. J. 2006 90: L42-L44; Published ahead of print on January 6, 2006 as doi:10.1529/biophysj.105.077941. [Abstract] [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

Prabal K. Maiti, Tod A. Pascal, Nagarajan Vaidehi, Jiyoung Heo, and William A. Goddard, III

Atomic-Level Simulations of Seeman DNA Nanostructures: The Paranemic Crossover in Salt Solution
Biophys. J. 2006 90: 1463-1479. [Abstract] [Full Text] [PDF]  

Flore Joli, Edith Hantz, and Brigitte Hartmann

Structure and Dynamics of Phosphate Linkages and Sugars in an Abasic Hexaloop RNA Hairpin
Biophys. J. 2006 90: 1480-1488; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.070862. [Abstract] [Full Text] [PDF]  

Mikhail A. Panteleev, Mikhail V. Ovanesov, Dmitrii A. Kireev, Aleksei M. Shibeko, Elena I. Sinauridze, Natalya M. Ananyeva, Andrey A. Butylin, Evgueni L. Saenko, and Fazoil I. Ataullakhanov

Spatial Propagation and Localization of Blood Coagulation Are Regulated by Intrinsic and Protein C Pathways, Respectively
Biophys. J. 2006 90: 1489-1500; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.069062. [Abstract] [Full Text] [PDF] [Supplemental]  

Grace Brannigan and Frank L. H. Brown

A Consistent Model for Thermal Fluctuations and Protein-Induced Deformations in Lipid Bilayers
Biophys. J. 2006 90: 1501-1520; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.075838. [Abstract] [Full Text] [PDF]  

Magnus Andersson, Erik Fällman, Bernt Eric Uhlin, and Ove Axner

A Sticky Chain Model of the Elongation and Unfolding of Escherichia coli P Pili under Stress
Biophys. J. 2006 90: 1521-1534; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.074674. [Abstract] [Full Text] [PDF]  

Ran Friedman, Esther Nachliel, and Menachem Gutman

Fatty Acid Binding Proteins: Same Structure but Different Binding Mechanisms? Molecular Dynamics Simulations of Intestinal Fatty Acid Binding Protein
Biophys. J. 2006 90: 1535-1545; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.071571. [Abstract] [Full Text] [PDF] [Supplemental]  

E. Z. Bagci, Y. Vodovotz, T. R. Billiar, G. B. Ermentrout, and I. Bahar

Bistability in Apoptosis: Roles of Bax, Bcl-2, and Mitochondrial Permeability Transition Pores
Biophys. J. 2006 90: 1546-1559; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.068122. [Abstract] [Full Text] [PDF]  

Haiping Hao, Daniel E. Zak, Thomas Sauter, James Schwaber, and Babatunde A. Ogunnaike

Modeling the VPAC₂-Activated cAMP/PKA Signaling Pathway: From Receptor to Circadian Clock Gene Induction
Biophys. J. 2006 90: 1560-1571; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.065250. [Abstract] [Full Text] [PDF] [Supplemental]  

Jhih-Wei Chu and Gregory A. Voth

Coarse-Grained Modeling of the Actin Filament Derived from Atomistic-Scale Simulations
Biophys. J. 2006 90: 1572-1582; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.073924. [Abstract] [Full Text] [PDF]  

Paula Petrone and Vijay S. Pande

Can Conformational Change Be Described by Only a Few Normal Modes?
Biophys. J. 2006 90: 1583-1593; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.070045. [Abstract] [Full Text] [PDF]  

Alexander Vologodskii

Brownian Dynamics Simulation of Knot Diffusion along a Stretched DNA Molecule
Biophys. J. 2006 90: 1594-1597; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.074682. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Zara A. Sands, Alessandro Grottesi, and Mark S. P. Sansom

The Intrinsic Flexibility of the Kv Voltage Sensor and Its Implications for Channel Gating
Biophys. J. 2006 90: 1598-1606; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.072199. [Abstract] [Full Text] [PDF]  

Miguel Holmgren and Robert F. Rakowski

Charge Translocation by the Na⁺/K⁺ Pump under Na⁺/Na⁺ Exchange Conditions: Intracellular Na⁺ Dependence
Biophys. J. 2006 90: 1607-1616; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.072942. [Abstract] [Full Text] [PDF]  

Christophe Danelon, Ekaterina M. Nestorovich, Mathias Winterhalter, Matteo Ceccarelli, and Sergey M. Bezrukov

Interaction of Zwitterionic Penicillins with the OmpF Channel Facilitates Their Translocation
Biophys. J. 2006 90: 1617-1627; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.075192. [Abstract] [Full Text] [PDF]  

Harpreet Singh and Richard H. Ashley

Redox Regulation of CLIC1 by Cysteine Residues Associated with the Putative Channel Pore
Biophys. J. 2006 90: 1628-1638; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.072678. [Abstract] [Full Text] [PDF]  

MEMBRANES:

J. Henriksen, A. C. Rowat, E. Brief, Y. W. Hsueh, J. L. Thewalt, M. J. Zuckermann, and J. H. Ipsen

Universal Behavior of Membranes with Sterols
Biophys. J. 2006 90: 1639-1649; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.067652. [Abstract] [Full Text] [PDF]  

Martin B. Ulmschneider, Mark S. P. Sansom, and Alfredo Di Nola

Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques
Biophys. J. 2006 90: 1650-1660; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.065367. [Abstract] [Full Text] [PDF]  

S. Moses Dennison, Mark E. Bowen, Axel T. Brunger, and Barry R. Lentz

Neuronal SNAREs Do Not Trigger Fusion between Synthetic Membranes but Do Promote PEG-Mediated Membrane Fusion
Biophys. J. 2006 90: 1661-1675; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.069617. [Abstract] [Full Text] [PDF]  

Erik Strandberg, Parvesh Wadhwani, Pierre Tremouilhac, Ulrich H. N. Dürr, and Anne S. Ulrich

Solid-State NMR Analysis of the PGLa Peptide Orientation in DMPC Bilayers: Structural Fidelity of ²H-Labels versus High Sensitivity of ¹⁹F-NMR
Biophys. J. 2006 90: 1676-1686; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.073858. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Mahito Kikumoto, Masashi Kurachi, Valer Tosa, and Hideo Tashiro

Flexural Rigidity of Individual Microtubules Measured by a Buckling Force with Optical Traps
Biophys. J. 2006 90: 1687-1696; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.104.055483. [Abstract] [Full Text] [PDF]  

S. A. Niederer, P. J. Hunter, and N. P. Smith

A Quantitative Analysis of Cardiac Myocyte Relaxation: A Simulation Study
Biophys. J. 2006 90: 1697-1722; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.069534. [Abstract] [Full Text] [PDF]  

Ryuji Toh, Masakazu Shinohara, Tomofumi Takaya, Tomoya Yamashita, Shigeru Masuda, Seinosuke Kawashima, Mitsuhiro Yokoyama, and Naoto Yagi

An X-Ray Diffraction Study on Mouse Cardiac Cross-Bridge Function In Vivo: Effects of Adrenergic ß-Stimulation
Biophys. J. 2006 90: 1723-1728; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.074062. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Xuesong Shi and Robert B. Macgregor, Jr.

Temperature Dependence of the Volumetric Parameters of Drug Binding to Poly[d(A-T)]·Poly[d(A-T)] and Poly(dA)·Poly(dT)
Biophys. J. 2006 90: 1729-1738; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.066258. [Abstract] [Full Text] [PDF]  

PROTEINS:

Kausiki Datta, Andy J. Wowor, Allison J. Richard, and Vince J. LiCata

Temperature Dependence and Thermodynamics of Klenow Polymerase Binding to Primed-Template DNA
Biophys. J. 2006 90: 1739-1751; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.071837. [Abstract] [Full Text] [PDF]  

Jochen Zimmer, Declan A. Doyle, and J. Günter Grossmann

Structural Characterization and pH-Induced Conformational Transition of Full-Length KcsA
Biophys. J. 2006 90: 1752-1766; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.071175. [Abstract] [Full Text] [PDF]  

Nitin Rathore, Thomas A. Knotts, IV, and Juan J. de Pablo

Confinement Effects on the Thermodynamics of Protein Folding: Monte Carlo Simulations
Biophys. J. 2006 90: 1767-1773; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.071076. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Hideyo Inouye, Deepak Sharma, Warren J. Goux, and Daniel A. Kirschner

Structure of Core Domain of Fibril-Forming PHF/Tau Fragments
Biophys. J. 2006 90: 1774-1789; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.070136. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Marco Mank, Dierk F. Reiff, Nicola Heim, Michael W. Friedrich, Alexander Borst, and Oliver Griesbeck

A FRET-Based Calcium Biosensor with Fast Signal Kinetics and High Fluorescence Change
Biophys. J. 2006 90: 1790-1796; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.073536. [Abstract] [Full Text] [PDF] [Supplemental]  

Seung-Cheol Lee, Jee-Hyun Cho, Daniel Mietchen, Young-Sook Kim, Kwan Soo Hong, Chulhyun Lee, Dongmin Kang, Ki Deok Park, Byong-Seok Choi, and Chaejoon Cheong

Subcellular In Vivo ¹H MR Spectroscopy of Xenopus laevis Oocytes
Biophys. J. 2006 90: 1797-1803; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.073502. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Guoying Jiang, Angela H. Huang, Yunfei Cai, Monica Tanase, and Michael P. Sheetz

Rigidity Sensing at the Leading Edge through _vß₃ Integrins and RPTP
Biophys. J. 2006 90: 1804-1809; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.072462. [Abstract] [Full Text] [PDF]  

Sophie Bohnet, Revathi Ananthakrishnan, Alex Mogilner, Jean-Jacques Meister, and Alexander B. Verkhovsky

Weak Force Stalls Protrusion at the Leading Edge of the Lamellipodium
Biophys. J. 2006 90: 1810-1820; Published ahead of print on December 2, 2005 as doi:10.1529/biophysj.105.064600. [Abstract] [Full Text] [PDF] [Supplemental]  

Alberto Martín-Molina, Susana Moreno-Flores, Eric Perez, Dietmar Pum, Uwe B. Sleytr, and José L. Toca-Herrera

Structure, Surface Interactions, and Compressibility of Bacterial S-Layers through Scanning Force Microscopy and the Surface Force Apparatus
Biophys. J. 2006 90: 1821-1829; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.067041. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

A. Giancippoli, M. Novara, A. de Luca, P. Baldelli, A. Marcantoni, E. Carbone, and V. Carabelli

Low-Threshold Exocytosis Induced by cAMP-Recruited Ca_V3.2 (_1H) Channels in Rat Chromaffin Cells
Biophys. J. 2006 90: 1830-1841; Published ahead of print on December 16, 2005 as doi:10.1529/biophysj.105.071647. [Abstract] [Full Text] [PDF]  

OTHER:

J. E. Solomon and M. R. Paul

The Kinetics of Analyte Capture on Nanoscale Sensors
Biophys. J. 2006 90: 1842-1852; Published ahead of print on December 9, 2005 as doi:10.1529/biophysj.105.067835. [Abstract] [Full Text] [PDF]  

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