BIOPHYSICAL LETTERS:

Nicolas Sluis-Cremer and Ellis S. Kempner

Radiation Target Analyses of DNA Template/Primer Complexes
Biophys. J. 2006 90: L61-L63; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.106.083261. [Abstract] [Full Text] [PDF]  

Werner Treptow and Mounir Tarek

Environment of the Gating Charges in the Kv1.2 Shaker Potassium Channel
Biophys. J. 2006 90: L64-L66; Published ahead of print on March 13, 2006 as doi:10.1529/biophysj.106.080754. [Abstract] [Full Text] [PDF] [Supplement]  

BIOPHYSICAL THEORY AND MODELING:

Martin Hemberg, Sophia N. Yaliraki, and Mauricio Barahona

Stochastic Kinetics of Viral Capsid Assembly Based on Detailed Protein Structures
Biophys. J. 2006 90: 3029-3042; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.076737. [Abstract] [Full Text] [PDF]  

Chigusa Kobayashi and Shoji Takada

Protein Grabs a Ligand by Extending Anchor Residues: Molecular Simulation for Ca²⁺ Binding to Calmodulin Loop
Biophys. J. 2006 90: 3043-3051; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.078071. [Abstract] [Full Text] [PDF]  

Alfonso De Simone, Roberta Spadaccini, Piero A. Temussi, and Franca Fraternali

Toward the Understanding of MNEI Sweetness from Hydration Map Surfaces
Biophys. J. 2006 90: 3052-3061; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.073171. [Abstract] [Full Text] [PDF] [Supplement]  

Sergej Vasil'ev and Doug Bruce

A Protein Dynamics Study of Photosystem II: The Effects of Protein Conformation on Reaction Center Function
Biophys. J. 2006 90: 3062-3073; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.076075. [Abstract] [Full Text] [PDF]  

Edmund J. Crampin and Nicolas P. Smith

A Dynamic Model of Excitation-Contraction Coupling during Acidosis in Cardiac Ventricular Myocytes
Biophys. J. 2006 90: 3074-3090; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.070557. [Abstract] [Full Text] [PDF] [Supplement]  

Andrew Krueger, Ekaterina Protozanova, and Maxim D. Frank-Kamenetskii

Sequence-Dependent Basepair Opening in DNA Double Helix
Biophys. J. 2006 90: 3091-3099; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.078774. [Abstract] [Full Text] [PDF]  

C. Weber, A. Stasiak, P. De Los Rios, and G. Dietler

Numerical Simulation of Gel Electrophoresis of DNA Knots in Weak and Strong Electric Fields
Biophys. J. 2006 90: 3100-3105; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.070128. [Abstract] [Full Text] [PDF]  

Li Zhang and Dimitrios Morikis

Immunophysical Properties and Prediction of Activities for Vaccinia Virus Complement Control Protein and Smallpox Inhibitor of Complement Enzymes Using Molecular Dynamics and Electrostatics
Biophys. J. 2006 90: 3106-3119; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.068130. [Abstract] [Full Text] [PDF] [Supplement]  

Antonio Politi, Lawrence D. Gaspers, Andrew P. Thomas, and Thomas Höfer

Models of IP₃ and Ca²⁺ Oscillations: Frequency Encoding and Identification of Underlying Feedbacks
Biophys. J. 2006 90: 3120-3133; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.072249. [Abstract] [Full Text] [PDF] [Supplement]  

Jeroen van Gestel and Simon W. de Leeuw

A Statistical-Mechanical Theory of Fibril Formation in Dilute Protein Solutions
Biophys. J. 2006 90: 3134-3145. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Vasilica Nache, Jana Kusch, Volker Hagen, and Klaus Benndorf

Gating of Cyclic Nucleotide-Gated (CNGA1) Channels by cGMP Jumps and Depolarizing Voltage Steps
Biophys. J. 2006 90: 3146-3154; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.078667. [Abstract] [Full Text] [PDF]  

Greg Runke, Elke Maier, William A. T. Summers, Denice C. Bay, Roland Benz, and Deborah A. Court

Deletion Variants of Neurospora Mitochondrial Porin: Electrophysiological and Spectroscopic Analysis
Biophys. J. 2006 90: 3155-3164; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.072520. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Chad Leidy, Lars Linderoth, Thomas L. Andresen, Ole G. Mouritsen, Kent Jørgensen, and Günther H. Peters

Domain-Induced Activation of Human Phospholipase A₂ Type IIA: Local versus Global Lipid Composition
Biophys. J. 2006 90: 3165-3175; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.070987. [Abstract] [Full Text] [PDF]  

Benjamin L. Stottrup and Sarah L. Keller

Phase Behavior of Lipid Monolayers Containing DPPC and Cholesterol Analogs
Biophys. J. 2006 90: 3176-3183; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.072959. [Abstract] [Full Text] [PDF]  

Frédéric Gerber, Marie Pierre Krafft, Thierry F. Vandamme, Michel Goldmann, and Philippe Fontaine

Fluidization of a Dipalmitoyl Phosphatidylcholine Monolayer by Fluorocarbon Gases: Potential Use in Lung Surfactant Therapy
Biophys. J. 2006 90: 3184-3192; Published ahead of print on February 24, 2006 as doi:10.1529/biophysj.105.077008. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Thomas M. Butler, Susan U. Mooers, and Marion J. Siegman

Catch Force Links and the Low to High Force Transition of Myosin
Biophys. J. 2006 90: 3193-3202; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.077453. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Haiyuan Zhang, Haijia Yu, Jinsong Ren, and Xiaogang Qu

Reversible B/Z-DNA Transition under the Low Salt Condition and Non-B-Form PolydApolydT Selectivity by a Cubane-Like Europium-L-Aspartic Acid Complex
Biophys. J. 2006 90: 3203-3207; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.078402. [Abstract] [Full Text] [PDF]  

Gerald S. Manning

The Contribution of Transient Counterion Imbalances to DNA Bending Fluctuations
Biophys. J. 2006 90: 3208-3215; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.078865. [Abstract] [Full Text] [PDF]  

PROTEINS:

Eliana D. Grimm, Rodrigo V. Portugal, Mário de Oliveira Neto, Nádia H. Martins, Igor Polikarpov, Arnaldo Zaha, and Henrique B. Ferreira

Structural Analysis of an Echinococcus granulosus Actin-Fragmenting Protein by Small-Angle X-Ray Scattering Studies and Molecular Modeling
Biophys. J. 2006 90: 3216-3223; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.067801. [Abstract] [Full Text] [PDF]  

Diannan Lu, Zheng Liu, and Jianzhong Wu

Structural Transitions of Confined Model Proteins: Molecular Dynamics Simulation and Experimental Validation
Biophys. J. 2006 90: 3224-3238; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.071761. [Abstract] [Full Text] [PDF]  

Edi Gabellieri and Giovanni B. Strambini

ANS Fluorescence Detects Widespread Perturbations of Protein Tertiary Structure in Ice
Biophys. J. 2006 90: 3239-3245; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.074948. [Abstract] [Full Text] [PDF]  

Jonathan P. Williams, Daniel C. Smith, Brian N. Green, Brian D. Marsden, Keith R. Jennings, Lynne M. Roberts, and James H. Scrivens

Gas Phase Characterization of the Noncovalent Quaternary Structure of Cholera Toxin and the Cholera Toxin B Subunit Pentamer
Biophys. J. 2006 90: 3246-3254; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.076455. [Abstract] [Full Text] [PDF]  

Inna Y. Churbanova, Andrey Tronin, Joseph Strzalka, Thomas Gog, Ivan Kuzmenko, Jonas S. Johansson, and J. Kent Blasie

Monolayers of a Model Anesthetic-Binding Membrane Protein: Formation, Characterization, and Halothane-Binding Affinity
Biophys. J. 2006 90: 3255-3266; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.072348. [Abstract] [Full Text] [PDF]  

Mu Gao and Klaus Schulten

Onset of Anthrax Toxin Pore Formation
Biophys. J. 2006 90: 3267-3279; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.079376. [Abstract] [Full Text] [PDF] [Supplemental]  

Jennifer M. Bui, Zoran Radic, Palmer Taylor, and J. Andrew McCammon

Conformational Transitions in Protein-Protein Association: Binding of Fasciculin-2 to Acetylcholinesterase
Biophys. J. 2006 90: 3280-3287; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.075564. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

K. T. Samiee, J. M. Moran-Mirabal, Y. K. Cheung, and H. G. Craighead

Zero Mode Waveguides for Single-Molecule Spectroscopy on Lipid Membranes
Biophys. J. 2006 90: 3288-3299; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.072819. [Abstract] [Full Text] [PDF]  

Ranieri Bizzarri, Caterina Arcangeli, Daniele Arosio, Fernanda Ricci, Paolo Faraci, Francesco Cardarelli, and Fabio Beltram

Development of a Novel GFP-based Ratiometric Excitation and Emission pH Indicator for Intracellular Studies
Biophys. J. 2006 90: 3300-3314. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Thuc T. Le, Thierry Emonet, Sebastien Harlepp, Calin C. Guet, and Philippe Cluzel

Dynamical Determinants of Drug-Inducible Gene Expression in a Single Bacterium
Biophys. J. 2006 90: 3315-3321; Published ahead of print on February 3, 2006 as doi:10.1529/biophysj.105.073353. [Abstract] [Full Text] [PDF] [Supplement]  

Ming Ming, Miao Lu, Sergei P. Balashov, Thomas G. Ebrey, Qingguo Li, and Jiandong Ding

pH Dependence of Light-Driven Proton Pumping by an Archaerhodopsin from Tibet: Comparison with Bacteriorhodopsin
Biophys. J. 2006 90: 3322-3332; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.076547. [Abstract] [Full Text] [PDF]  

Albert J. Jin, Kondury Prasad, Paul D. Smith, Eileen M. Lafer, and Ralph Nossal

Measuring the Elasticity of Clathrin-Coated Vesicles via Atomic Force Microscopy
Biophys. J. 2006 90: 3333-3344; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.068742. [Abstract] [Full Text] [PDF]  

Martynas Gavutis, Eva Jaks, Peter Lamken, and Jacob Piehler

Determination of the Two-Dimensional Interaction Rate Constants of a Cytokine Receptor Complex
Biophys. J. 2006 90: 3345-3355; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.072546. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

M. Flores, R. Isaacson, E. Abresch, R. Calvo, W. Lubitz, and G. Feher

Protein-Cofactor Interactions in Bacterial Reaction Centers from Rhodobacter sphaeroides R-26: I. Identification of the ENDOR Lines Associated with the Hydrogen Bonds to the Primary Quinone Q_A^•–
Biophys. J. 2006 90: 3356-3362; Published ahead of print on February 10, 2006 as doi:10.1529/biophysj.105.077883. [Abstract] [Full Text] [PDF]  

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