BIOPHYSICAL LETTERS:

Canay Ege, Maria K. Ratajczak, Jaroslaw Majewski, Kristian Kjaer, and Ka Yee C. Lee

Evidence for Lipid/Cholesterol Ordering in Model Lipid Membranes
Biophys. J. 2006 91: L1-L3; Published ahead of print on May 5, 2006 as doi:10.1529/biophysj.106.085134. [Abstract] [Full Text] [PDF]  

X.-G. Zhang, Predrag S. Krstic, Radomir Zikic, Jack C. Wells, and Miguel Fuentes-Cabrera

First-Principles Transversal DNA Conductance Deconstructed
Biophys. J. 2006 91: L4-L6; Published ahead of print on May 5, 2006 as doi:10.1529/biophysj.106.085548. [Abstract] [Full Text] [PDF]  

Sivakumar Sekharan, Oliver Weingart, and Volker Buss

Ground and Excited States of Retinal Schiff Base Chromophores by Multiconfigurational Perturbation Theory
Biophys. J. 2006 91: L7-L9; Published ahead of print on April 28, 2006 as doi:10.1529/biophysj.106.087122. [Abstract] [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

Ye Chen-Izu, Stacey L. McCulle, Chris W. Ward, Christian Soeller, Bryan M. Allen, Cal Rabang, Mark B. Cannell, C. William Balke, and Leighton T. Izu

Three-Dimensional Distribution of Ryanodine Receptor Clusters in Cardiac Myocytes
Biophys. J. 2006 91: 1-13; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.077180. [Abstract] [Full Text] [PDF] [Supplemental]  

Christopher D. Snow, Young Min Rhee, and Vijay S. Pande

Kinetic Definition of Protein Folding Transition State Ensembles and Reaction Coordinates
Biophys. J. 2006 91: 14-24; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.075689. [Abstract] [Full Text] [PDF]  

Christopher Forrey and M. Muthukumar

Langevin Dynamics Simulations of Genome Packing in Bacteriophage
Biophys. J. 2006 91: 25-41; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.073429. [Abstract] [Full Text] [PDF]  

Michael F. Hagan and David Chandler

Dynamic Pathways for Viral Capsid Assembly
Biophys. J. 2006 91: 42-54; Published ahead of print on March 24, 2006 as doi:10.1529/biophysj.105.076851. [Abstract] [Full Text] [PDF]  

Ho Sup Choi, June Huh, and Won Ho Jo

Electrostatic Energy Calculation on the pH-Induced Conformational Change of Influenza Virus Hemagglutinin
Biophys. J. 2006 91: 55-60; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.070565. [Abstract] [Full Text] [PDF]  

Alice Nicolas and Samuel. A. Safran

Limitation of Cell Adhesion by the Elasticity of the Extracellular Matrix
Biophys. J. 2006 91: 61-73; Published ahead of print on March 31, 2006 as doi:10.1529/biophysj.105.077115. [Abstract] [Full Text] [PDF]  

Anmar Khadra and Yue-Xian Li

A Model for the Pulsatile Secretion of Gonadotropin-Releasing Hormone from Synchronized Hypothalamic Neurons
Biophys. J. 2006 91: 74-83; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.080630. [Abstract] [Full Text] [PDF]  

Ting Lu, Jeff Hasty, and Peter G. Wolynes

Effective Temperature in Stochastic Kinetics and Gene Networks
Biophys. J. 2006 91: 84-94; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.074914. [Abstract] [Full Text] [PDF]  

Leighton T. Izu, Shawn A. Means, John N. Shadid, Ye Chen-Izu, and C. William Balke

Interplay of Ryanodine Receptor Distribution and Calcium Dynamics
Biophys. J. 2006 91: 95-112; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.077214. [Abstract] [Full Text] [PDF] [Supplemental]  

Mark E. Fleury, Kendrick C. Boardman, and Melody A. Swartz

Autologous Morphogen Gradients by Subtle Interstitial Flow and Matrix Interactions
Biophys. J. 2006 91: 113-121; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.080192. [Abstract] [Full Text] [PDF]  

Evan T. Powers and David L. Powers

The Kinetics of Nucleated Polymerizations at High Concentrations: Amyloid Fibril Formation Near and Above the "Supercritical Concentration"
Biophys. J. 2006 91: 122-132; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.073767. [Abstract] [Full Text] [PDF] [Supplemental]  

Gaurav Arya, Qing Zhang, and Tamar Schlick

Flexible Histone Tails in a New Mesoscopic Oligonucleosome Model
Biophys. J. 2006 91: 133-150; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.106.083006. [Abstract] [Full Text] [PDF]  

Erin R. Higgins, Mark B. Cannell, and James Sneyd

A Buffering SERCA Pump in Models of Calcium Dynamics
Biophys. J. 2006 91: 151-163; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.075747. [Abstract] [Full Text] [PDF]  

Edward Lyman and Daniel M. Zuckerman

Ensemble-Based Convergence Analysis of Biomolecular Trajectories
Biophys. J. 2006 91: 164-172; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.082941. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

L. Goldman

Quantitative Analysis of a Fully Generalized Four-State Kinetic Scheme
Biophys. J. 2006 91: 173-178. [Abstract] [Full Text] [PDF]  

Richard J. Flannery, Donald A. French, and Steven J. Kleene

Clustering of Cyclic-Nucleotide-Gated Channels in Olfactory Cilia
Biophys. J. 2006 91: 179-188; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.079046. [Abstract] [Full Text] [PDF]  

MEMBRANES:

V. A. J. Frolov, Y. A. Chizmadzhev, F. S. Cohen, and J. Zimmerberg

"Entropic Traps" in the Kinetics of Phase Separation in Multicomponent Membranes Stabilize Nanodomains
Biophys. J. 2006 91: 189-205; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.068502. [Abstract] [Full Text] [PDF]  

Ayyalusamy Ramamoorthy, Sathiah Thennarasu, Dong-Kuk Lee, Anmin Tan, and Lee Maloy

Solid-State NMR Investigation of the Membrane-Disrupting Mechanism of Antimicrobial Peptides MSI-78 and MSI-594 Derived from Magainin 2 and Melittin
Biophys. J. 2006 91: 206-216; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.073890. [Abstract] [Full Text] [PDF]  

Siegfried Steltenkamp, Martin Michael Müller, Markus Deserno, Christian Hennesthal, Claudia Steinem, and Andreas Janshoff

Mechanical Properties of Pore-Spanning Lipid Bilayers Probed by Atomic Force Microscopy
Biophys. J. 2006 91: 217-226; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.081398. [Abstract] [Full Text] [PDF] [Supplemental]  

Derek Marsh, Baladhandapani Shanmugavadivu, and Jörg H. Kleinschmidt

Membrane Elastic Fluctuations and the Insertion and Tilt of ß-Barrel Proteins
Biophys. J. 2006 91: 227-232; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.079004. [Abstract] [Full Text] [PDF]  

Daniel J. Estes, Santiago R. Lopez, A. Oveta Fuller, and Michael Mayer

Triggering and Visualizing the Aggregation and Fusion of Lipid Membranes in Microfluidic Chambers
Biophys. J. 2006 91: 233-243; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.076398. [Abstract] [Full Text] [PDF] [Supplemental]  

Michiko Tashiro, Pulat Tursun, Takefumi Miyazaki, Masaru Watanabe, and Masato Konishi

Effects of Intracellular and Extracellular Concentrations of Ca²⁺, K⁺, and Cl^– on the Na⁺-Dependent Mg²⁺ Efflux in Rat Ventricular Myocytes
Biophys. J. 2006 91: 244-254; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.106.082495. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Martin O. Lenz, Robert Huber, Bernhard Schmidt, Peter Gilch, Rolf Kalmbach, Martin Engelhard, and Josef Wachtveitl

First Steps of Retinal Photoisomerization in Proteorhodopsin
Biophys. J. 2006 91: 255-262; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.074690. [Abstract] [Full Text] [PDF]  

PROTEINS:

Christian D. Geierhaas, Robert B. Best, Emanuele Paci, Michele Vendruscolo, and Jane Clarke

Structural Comparison of the Two Alternative Transition States for Folding of TI I27
Biophys. J. 2006 91: 263-275; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.077057. [Abstract] [Full Text] [PDF]  

Marco Buscaglia, Lisa J. Lapidus, William A. Eaton, and James Hofrichter

Effects of Denaturants on the Dynamics of Loop Formation in Polypeptides
Biophys. J. 2006 91: 276-288; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.071167. [Abstract] [Full Text] [PDF]  

E. Cornicchi, M. Marconi, G. Onori, and A. Paciaroni

Controlling the Protein Dynamical Transition with Sugar-Based Bioprotectant Matrices: A Neutron Scattering Study
Biophys. J. 2006 91: 289-297; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.081752. [Abstract] [Full Text] [PDF]  

Katherine L. Gudiksen, Irina Gitlin, Demetri T. Moustakas, and George M. Whitesides

Increasing the Net Charge and Decreasing the Hydrophobicity of Bovine Carbonic Anhydrase Decreases the Rate of Denaturation with Sodium Dodecyl Sulfate
Biophys. J. 2006 91: 298-310; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.106.081547. [Abstract] [Full Text] [PDF] [Supplemental]  

SPECTROSCOPY, IMAGING OTHER TECHNIQUES:

Holly A. Leddy, Mansoor A. Haider, and Farshid Guilak

Diffusional Anisotropy in Collagenous Tissues: Fluorescence Imaging of Continuous Point Photobleaching
Biophys. J. 2006 91: 311-316; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.075283. [Abstract] [Full Text] [PDF]  

Kaustubh R. Rau, Pedro A. Quinto-Su, Amy N. Hellman, and Vasan Venugopalan

Pulsed Laser Microbeam-Induced Cell Lysis: Time-Resolved Imaging and Analysis of Hydrodynamic Effects
Biophys. J. 2006 91: 317-329; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.079921. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Peter Hinow, Carl E. Rogers, Christopher E. Barbieri, Jennifer A. Pietenpol, Anne K. Kenworthy, and Emmanuele DiBenedetto

The DNA Binding Activity of p53 Displays Reaction-Diffusion Kinetics
Biophys. J. 2006 91: 330-342; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.078303. [Abstract] [Full Text] [PDF]  

Zifu Wang, Jagesh V. Shah, Michael W. Berns, and Don W. Cleveland

In Vivo Quantitative Studies of Dynamic Intracellular Processes Using Fluorescence Correlation Spectroscopy
Biophys. J. 2006 91: 343-351; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.077891. [Abstract] [Full Text] [PDF]  

Mian Long, Juan Chen, Ning Jiang, Periasamy Selvaraj, Rodger P. McEver, and Cheng Zhu

Probabilistic Modeling of Rosette Formation
Biophys. J. 2006 91: 352-363; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.106.082909. [Abstract] [Full Text] [PDF]  

J. Boutet de Monvel, W. E. Brownell, and M. Ulfendahl

Lateral Diffusion Anisotropy and Membrane Lipid/Skeleton Interaction in Outer Hair Cells
Biophys. J. 2006 91: 364-381; Published ahead of print on April 7, 2006 as doi:10.1529/biophysj.105.076331. [Abstract] [Full Text] [PDF]  

Madhukar S. Dasika, Anthony Burgard, and Costas D. Maranas

A Computational Framework for the Topological Analysis and Targeted Disruption of Signal Transduction Networks
Biophys. J. 2006 91: 382-398; Published ahead of print on April 14, 2006 as doi:10.1529/biophysj.105.069724. [Abstract] [Full Text] [PDF] [Supplemental]  

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