BIOPHYSICAL LETTERS:

Werner Treptow and Mounir Tarek

K⁺ Conduction in the Selectivity Filter of Potassium Channels Is Monitored by the Charge Distribution along Their Sequence
Biophys. J. 2006 91: L81-L83; Published ahead of print on September 15, 2006 as doi:10.1529/biophysj.106.095992. [Abstract] [Full Text] [PDF] [Supplement]  

John Holyoake, Victoria Caulfeild, Stephen A. Baldwin, and Mark S. P. Sansom

Modeling, Docking, and Simulation of the Major Facilitator Superfamily
Biophys. J. 2006 91: L84-L86; Published ahead of print on September 15, 2006 as doi:10.1529/biophysj.106.093971. [Abstract] [Full Text] [PDF] [Supplement]  

BIOPHYSICAL THEORY AND MODELING:

Sandipan Mohanty and Ulrich H. E. Hansmann

Folding of Proteins with Diverse Folds
Biophys. J. 2006 91: 3573-3578; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.087668. [Abstract] [Full Text] [PDF]  

Igor M. Neelov, David B. Adolf, Tom C. B. McLeish, and Emanuele Paci

Molecular Dynamics Simulation of Dextran Extension by Constant Force in Single Molecule AFM
Biophys. J. 2006 91: 3579-3588; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.105.079236. [Abstract] [Full Text] [PDF]  

Burak Erman

The Gaussian Network Model: Precise Prediction of Residue Fluctuations and Application to Binding Problems
Biophys. J. 2006 91: 3589-3599; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.090803. [Abstract] [Full Text] [PDF]  

Lawrence C.-L. Lin, Jay T. Groves, and Frank L. H. Brown

Analysis of Shape, Fluctuations, and Dynamics in Intermembrane Junctions
Biophys. J. 2006 91: 3600-3606; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.091843. [Abstract] [Full Text] [PDF]  

Gerald S. Manning

The Persistence Length of DNA Is Reached from the Persistence Length of Its Null Isomer through an Internal Electrostatic Stretching Force
Biophys. J. 2006 91: 3607-3616; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.089029. [Abstract] [Full Text] [PDF]  

Ryan W. Benz, Hirsh Nanda, Francisco Castro-Román, Stephen H. White, and Douglas J. Tobias

Diffraction-Based Density Restraints for Membrane and Membrane-Peptide Molecular Dynamics Simulations
Biophys. J. 2006 91: 3617-3629; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.084483. [Abstract] [Full Text] [PDF]  

Peter L. Freddolino, Markus Dittrich, and Klaus Schulten

Dynamic Switching Mechanisms in LOV1 and LOV2 Domains of Plant Phototropins
Biophys. J. 2006 91: 3630-3639; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.088609. [Abstract] [Full Text] [PDF] [Supplement]  

Yeshitila Gebremichael, Gary S. Ayton, and Gregory A. Voth

Mesoscopic Modeling of Bacterial Flagellar Microhydrodynamics
Biophys. J. 2006 91: 3640-3652; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.091314. [Abstract] [Full Text] [PDF] [Supplement]  

Leslie Chin, Pengtao Yue, James J. Feng, and Chun Y. Seow

Mathematical Simulation of Muscle Cross-Bridge Cycle and Force-Velocity Relationship
Biophys. J. 2006 91: 3653-3663; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.092510. [Abstract] [Full Text] [PDF]  

Chun Wu, Hongxing Lei, Zhixiang Wang, Wei Zhang, and Yong Duan

Phenol Red Interacts with the Protofibril-Like Oligomers of an Amyloidogenic Hexapeptide NFGAIL through Both Hydrophobic and Aromatic Contacts
Biophys. J. 2006 91: 3664-3672; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.081877. [Abstract] [Full Text] [PDF] [Supplement]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Alessia Naso, Roberta Montisci, Franco Gambale, and Cristiana Picco

Stoichiometry Studies Reveal Functional Properties of KDC1 in Plant Shaker Potassium Channels
Biophys. J. 2006 91: 3673-3683; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.091777. [Abstract] [Full Text] [PDF]  

Jessica L. Bartlett, Yuezhou Li, and Paul Blount

Mechanosensitive Channel Gating Transitions Resolved by Functional Changes upon Pore Modification
Biophys. J. 2006 91: 3684-3691; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.088062. [Abstract] [Full Text] [PDF] [Supplement]  

MEMBRANES:

Li Wang, Rumiana Koynova, Harsh Parikh, and Robert C. MacDonald

Transfection Activity of Binary Mixtures of Cationic O-Substituted Phosphatidylcholine Derivatives: The Hydrophobic Core Strongly Modulates Physical Properties and DNA Delivery Efficacy
Biophys. J. 2006 91: 3692-3706; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.092700. [Abstract] [Full Text] [PDF]  

Simon Scheuring and James N. Sturgis

Dynamics and Diffusion in Photosynthetic Membranes from Rhodospirillum Photometricum
Biophys. J. 2006 91: 3707-3717; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.083709. [Abstract] [Full Text] [PDF]  

Stefan Raunser, Winfried Haase, Cornelia Franke, Gunter P. Eckert, Walter E. Müller, and Werner Kühlbrandt

Heterologously Expressed GLT-1 Associates in 200-nm Protein-Lipid Islands
Biophys. J. 2006 91: 3718-3726; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.086900. [Abstract] [Full Text] [PDF]  

Kalani J. Seu, Lee R. Cambrea, R. Michael Everly, and Jennifer S. Hovis

Influence of Lipid Chemistry on Membrane Fluidity: Tail and Headgroup Interactions
Biophys. J. 2006 91: 3727-3735; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.084590. [Abstract] [Full Text] [PDF]  

Xue Han, Mihaela Mihailescu, and Kalina Hristova

Neutron Diffraction Studies of Fluid Bilayers with Transmembrane Proteins: Structural Consequences of the Achondroplasia Mutation
Biophys. J. 2006 91: 3736-3747; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.092247. [Abstract] [Full Text] [PDF]  

Laura Bakás, Alexandr Chanturiya, Vanesa Herlax, and Joshua Zimmerberg

Paradoxical Lipid Dependence of Pores Formed by the Escherichia coli -Hemolysin in Planar Phospholipid Bilayer Membranes
Biophys. J. 2006 91: 3748-3755; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.090019. [Abstract] [Full Text] [PDF]  

Tomasz Róg and Marta Pasenkiewicz-Gierula

Cholesterol-Sphingomyelin Interactions: A Molecular Dynamics Simulation Study
Biophys. J. 2006 91: 3756-3767; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.080887. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Sengen Xu, Donald Martyn, Jessica Zaman, and Leepo C. Yu

X-ray Diffraction Studies of the Thick Filament in Permeabilized Myocardium from Rabbit
Biophys. J. 2006 91: 3768-3775; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.088971. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Koen Broess, Gediminas Trinkunas, Chantal D. van der Weij-de Wit, Jan P. Dekker, Arie van Hoek, and Herbert van Amerongen

Excitation Energy Transfer and Charge Separation in Photosystem II Membranes Revisited
Biophys. J. 2006 91: 3776-3786; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.085068. [Abstract] [Full Text] [PDF]  

Yutaka Shibata, Yoshitaka Saga, Hitoshi Tamiaki, and Shigeru Itoh

Low-Temperature Fluorescence from Single Chlorosomes, Photosynthetic Antenna Complexes of Green Filamentous and Sulfur Bacteria
Biophys. J. 2006 91: 3787-3796; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.084178. [Abstract] [Full Text] [PDF]  

Takeshi Eitoku, Xristo Zarate, Gennady V. Kozhukh, Jeong-Il Kim, Pill-Soon Song, and Masahide Terazima

Time-Resolved Detection of Conformational Changes in Oat Phytochrome A: Time-Dependent Diffusion
Biophys. J. 2006 91: 3797-3804; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.092882. [Abstract] [Full Text] [PDF]  

PROTEINS:

Igor K. Lednev, Vladimir V. Ermolenkov, Seiichiro Higashiya, Ludmila A. Popova, Natalya I. Topilina, and John T. Welch

Reversible Thermal Denaturation of a 60-kDa Genetically Engineered ß-Sheet Polypeptide
Biophys. J. 2006 91: 3805-3818; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.082792. [Abstract] [Full Text] [PDF]  

Ying Li, Aleksandra Z. Kijac, Stephen G. Sligar, and Chad M. Rienstra

Structural Analysis of Nanoscale Self-Assembled Discoidal Lipid Bilayers by Solid-State NMR Spectroscopy
Biophys. J. 2006 91: 3819-3828; Published ahead of print on August 11, 2006 as doi:10.1529/biophysj.106.087072. [Abstract] [Full Text] [PDF] [Supplement]  

Alexis Huet and Philippe Derreumaux

Impact of the Mutation A21G (Flemish Variant) on Alzheimer's ß-Amyloid Dimers by Molecular Dynamics Simulations
Biophys. J. 2006 91: 3829-3840; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.090993. [Abstract] [Full Text] [PDF]  

Yanina A. Goddard, Jean-Pierre Korb, and Robert G. Bryant

Structural and Dynamical Examination of the Low-Temperature Glass Transition in Serum Albumin
Biophys. J. 2006 91: 3841-3847; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.090126. [Abstract] [Full Text] [PDF]  

Eric Miller, Tzintzuni Garcia, Scott Hultgren, and Andres F. Oberhauser

The Mechanical Properties of E. coli Type 1 Pili Measured by Atomic Force Microscopy Techniques
Biophys. J. 2006 91: 3848-3856; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.088989. [Abstract] [Full Text] [PDF]  

S. Stolyarova, E. Saridakis, N. E. Chayen, and Y. Nemirovsky

A Model for Enhanced Nucleation of Protein Crystals on a Fractal Porous Substrate
Biophys. J. 2006 91: 3857-3863; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.082545. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Bogumil Zelent, Jane M. Vanderkooi, Ryan G. Coleman, Ignacy Gryczynski, and Zygmunt Gryczynski

Protonation of Excited State Pyrene-1-Carboxylate by Phosphate and Organic Acids in Aqueous Solution Studied by Fluorescence Spectroscopy
Biophys. J. 2006 91: 3864-3871; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.088740. [Abstract] [Full Text] [PDF]  

C. A. Bertrand, C. Laboisse, U. Hopfer, R. J. Bridges, and R. A. Frizzell

Methods for Detecting Internalized, FM 1-43 Stained Particles in Epithelial Cells and Monolayers
Biophys. J. 2006 91: 3872-3883; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.086983. [Abstract] [Full Text] [PDF] [Supplement]  

Mikhail Sergeev, Santiago Costantino, and Paul W. Wiseman

Measurement of Monomer-Oligomer Distributions via Fluorescence Moment Image Analysis
Biophys. J. 2006 91: 3884-3896; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.091181. [Abstract] [Full Text] [PDF] [Supplement]  

James D. Gwyer, Jingdong Zhang, Julea N. Butt, and Jens Ulstrup

Voltammetry and In Situ Scanning Tunneling Microscopy of Cytochrome c Nitrite Reductase on Au(111) Electrodes
Biophys. J. 2006 91: 3897-3906; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.089755. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Yunfei Cai, Nicolas Biais, Gregory Giannone, Monica Tanase, Guoying Jiang, Jake M. Hofman, Chris H. Wiggins, Pascal Silberzan, Axel Buguin, Benoit Ladoux, and Michael P. Sheetz

Nonmuscle Myosin IIA-Dependent Force Inhibits Cell Spreading and Drives F-Actin Flow
Biophys. J. 2006 91: 3907-3920; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.084806. [Abstract] [Full Text] [PDF]  

Changi Pack, Kenta Saito, Mamoru Tamura, and Masataka Kinjo

Microenvironment and Effect of Energy Depletion in the Nucleus Analyzed by Mobility of Multiple Oligomeric EGFPs
Biophys. J. 2006 91: 3921-3936; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.105.079467. [Abstract] [Full Text] [PDF] [Supplement]  

M. Castellarnau, A. Errachid, C. Madrid, A. Juárez, and J. Samitier

Dielectrophoresis as a Tool to Characterize and Differentiate Isogenic Mutants of Escherichia coli
Biophys. J. 2006 91: 3937-3945; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.088534. [Abstract] [Full Text] [PDF]  

Kathleen M. Van Citters, Brenton D. Hoffman, Gladys Massiera, and John C. Crocker

The Role of F-Actin and Myosin in Epithelial Cell Rheology
Biophys. J. 2006 91: 3946-3956; Published ahead of print on September 1, 2006 as doi:10.1529/biophysj.106.091264. [Abstract] [Full Text] [PDF]  

COMMENTS TO THE EDITOR:

Martin J. Bishop, Blanca Rodriguez, Natalia Trayanova, and David J. Gavaghan

Inference of Intramural Wavefront Orientation from Optical Recordings in Realistic Whole-Heart Models
Biophys. J. 2006 91: 3957-3958; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.092544. [Full Text] [PDF]  

Arkady M. Pertsov, Christian W. Zemlin, Christopher J. Hyatt, and Olivier Bernus

What Can We Learn from the Optically Recorded Epicardial Action Potential?
Biophys. J. 2006 91: 3959-3960; Published ahead of print on August 25, 2006 as doi:10.1529/biophysj.106.091835. [Abstract] [Full Text] [PDF]  

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