BIOPHYSICAL LETTERS:

Cosmin L. Pocanschi, Geetika J. Patel, Derek Marsh, and Jörg H. Kleinschmidt

Curvature Elasticity and Refolding of OmpA in Large Unilamellar Vesicles
Biophys. J. 2006 91: L75-L77; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.091439. [Abstract] [Full Text] [PDF]  

Joost van Mameren, Mauro Modesti, Roland Kanaar, Claire Wyman, Gijs J. L. Wuite, and Erwin J. G. Peterman

Dissecting Elastic Heterogeneity along DNA Molecules Coated Partly with Rad51 Using Concurrent Fluorescence Microscopy and Optical Tweezers
Biophys. J. 2006 91: L78-L80; Published ahead of print on August 18, 2006 as doi:10.1529/biophysj.106.089466. [Abstract] [Full Text] [PDF] [supplemental]  

NEW AND NOTABLE:

Barry R. Lentz

Seeing Is Believing: The Stalk Intermediate
Biophys. J. 2006 91: 2747-2748; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.090290. [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

Mark P. Brynildsen, Linh M. Tran, and James C. Liao

Versatility and Connectivity Efficiency of Bipartite Transcription Networks
Biophys. J. 2006 91: 2749-2759; Published ahead of print on June 30, 2006 as doi:10.1529/biophysj.106.082560. [Abstract] [Full Text] [PDF]  

Dmitry A. Kondrashov, Qiang Cui, and George N. Phillips, Jr.

Optimization and Evaluation of a Coarse-Grained Model of Protein Motion Using X-Ray Crystal Data
Biophys. J. 2006 91: 2760-2767; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.085894. [Abstract] [Full Text] [PDF] [supplemental]  

G. Fiorin, A. Pastore, P. Carloni, and M. Parrinello

Using Metadynamics to Understand the Mechanism of Calmodulin/Target Recognition at Atomic Detail
Biophys. J. 2006 91: 2768-2777; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.086611. [Abstract] [Full Text] [PDF] [supplement]  

Julia Adolphs and Thomas Renger

How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
Biophys. J. 2006 91: 2778-2797; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.105.079483. [Abstract] [Full Text] [PDF] [supplemental]  

Jiyao Wang, Yuqing Deng, and Benoît Roux

Absolute Binding Free Energy Calculations Using Molecular Dynamics Simulations with Restraining Potentials
Biophys. J. 2006 91: 2798-2814; Published ahead of print on July 14, 2006 as doi:10.1529/biophysj.106.084301. [Abstract] [Full Text] [PDF]  

Satyavani Vemparala, Leonor Saiz, Roderic G. Eckenhoff, and Michael L. Klein

Partitioning of Anesthetics into a Lipid Bilayer and their Interaction with Membrane-Bound Peptide Bundles
Biophys. J. 2006 91: 2815-2825; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.085324. [Abstract] [Full Text] [PDF]  

Michelle G. Botelho, Alex W. M. Rietveld, and Sérgio T. Ferreira

Long-Lived Conformational Isomerism of Protein Dimers: The Role of the Free Energy of Subunit Association
Biophys. J. 2006 91: 2826-2832; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.089706. [Abstract] [Full Text] [PDF]  

M. J. A. van Hoek and P. Hogeweg

In Silico Evolved lac Operons Exhibit Bistability for Artificial Inducers, but Not for Lactose
Biophys. J. 2006 91: 2833-2843; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.105.077420. [Abstract] [Full Text] [PDF] [supplemental]  

Nir S. Gov

Modeling the Size Distribution of Focal Adhesions
Biophys. J. 2006 91: 2844-2847; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.088484. [Abstract] [Full Text] [PDF]  

Hyunbum Jang, Buyong Ma, Thomas B. Woolf, and Ruth Nussinov

Interaction of Protegrin-1 with Lipid Bilayers: Membrane Thinning Effect
Biophys. J. 2006 91: 2848-2859; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.084046. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Avia Rosenhouse-Dantsker and Diomedes E. Logothetis

New Roles for a Key Glycine and Its Neighboring Residue in Potassium Channel Gating
Biophys. J. 2006 91: 2860-2873; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.105.080242. [Abstract] [Full Text] [PDF] [supplement]  

Takeshi Nomura, Masahiro Sokabe, and Kenjiro Yoshimura

Lipid-Protein Interaction of the MscS Mechanosensitive Channel Examined by Scanning Mutagenesis
Biophys. J. 2006 91: 2874-2881; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.084541. [Abstract] [Full Text] [PDF]  

Hong Xie and Pei-Hong Zhu

Biphasic Modulation of Ryanodine Receptors by Sulfhydryl Oxidation in Rat Ventricular Myocytes
Biophys. J. 2006 91: 2882-2891; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.087338. [Abstract] [Full Text] [PDF]  

Huanghe Yang, Lei Hu, Jingyi Shi, and Jianmin Cui

Tuning Magnesium Sensitivity of BK Channels by Mutations
Biophys. J. 2006 91: 2892-2900; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.090159. [Abstract] [Full Text] [PDF]  

Yu-Yang Zhang, Henry Sackin, and Lawrence G. Palmer

Localization of the pH Gate in Kir1.1 Channels
Biophys. J. 2006 91: 2901-2909; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.087700. [Abstract] [Full Text] [PDF]  

MEMBRANES:

G. A. Zampighi, L. M. Zampighi, N. Fain, S. Lanzavecchia, S. A. Simon, and E. M. Wright

Conical Electron Tomography of a Chemical Synapse: Vesicles Docked to the Active Zone are Hemi-Fused
Biophys. J. 2006 91: 2910-2918; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.084814. [Abstract] [Full Text] [PDF]  

Tighe A. Spurlin and Andrew A. Gewirth

Poly-L-Lysine-Induced Morphology Changes in Mixed Anionic/Zwitterionic and Neat Zwitterionic-Supported Phospholipid Bilayers
Biophys. J. 2006 91: 2919-2927; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.082479. [Abstract] [Full Text] [PDF]  

D. W. Allender and M. Schick

Phase Separation in Bilayer Lipid Membranes: Effects on the Inner Leaf Due to Coupling to the Outer Leaf
Biophys. J. 2006 91: 2928-2935; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.086868. [Abstract] [Full Text] [PDF]  

Chiara Nicolini, Anna Celli, Enrico Gratton, and Roland Winter

Pressure Tuning of the Morphology of Heterogeneous Lipid Vesicles: A Two-Photon-Excitation Fluorescence Microscopy Study
Biophys. J. 2006 91: 2936-2942; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.088716. [Abstract] [Full Text] [PDF]  

M. Meier, X. Li Blatter, A. Seelig, and J. Seelig

Interaction of Verapamil with Lipid Membranes and P-Glycoprotein: Connecting Thermodynamics and Membrane Structure with Functional Activity
Biophys. J. 2006 91: 2943-2955; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.089581. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Srinivasaraghavan Kannan, Kai Kohlhoff, and Martin Zacharias

B-DNA Under Stress: Over- and Untwisting of DNA during Molecular Dynamics Simulations
Biophys. J. 2006 91: 2956-2965; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.087163. [Abstract] [Full Text] [PDF]  

Simon J. Green, Daniel Lubrich, and Andrew J. Turberfield

DNA Hairpins: Fuel for Autonomous DNA Devices
Biophys. J. 2006 91: 2966-2975; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.084681. [Abstract] [Full Text] [PDF] [Supplement]  

Mika A. Kastenholz, Thomas U. Schwartz, and Philippe H. Hünenberger

The Transition between the B and Z Conformations of DNA Investigated by Targeted Molecular Dynamics Simulations with Explicit Solvation
Biophys. J. 2006 91: 2976-2990. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Berthold Borucki, Chandra P. Joshi, Harald Otto, Michael A. Cusanovich, and Maarten P. Heyn

The Transient Accumulation of the Signaling State of Photoactive Yellow Protein Is Controlled by the External pH
Biophys. J. 2006 91: 2991-3001; Published ahead of print on July 7, 2006 as doi:10.1529/biophysj.106.086645. [Abstract] [Full Text] [PDF]  

PROTEINS:

Semen O. Yesylevskyy, Valery N. Kharkyanen, and Alexander P. Demchenko

The Change of Protein Intradomain Mobility on Ligand Binding: Is It a Commonly Observed Phenomenon?
Biophys. J. 2006 91: 3002-3013; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.087866. [Abstract] [Full Text] [PDF] [supplement]  

I. Digel, Ch. Maggakis-Kelemen, K. F. Zerlin, Pt. Linder, N. Kasischke, P. Kayser, D. Porst, A. Temiz Artmann, and G. M. Artmann

Body Temperature-Related Structural Transitions of Monotremal and Human Hemoglobin
Biophys. J. 2006 91: 3014-3021; Published ahead of print on July 14, 2006 as doi:10.1529/biophysj.106.087809. [Abstract] [Full Text] [PDF]  

Enrica Droghetti, Silke Oellerich, Peter Hildebrandt, and Giulietta Smulevich

Heme Coordination States of Unfolded Ferrous Cytochrome c
Biophys. J. 2006 91: 3022-3031; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.105.079749. [Abstract] [Full Text] [PDF] [supplemental]  

Sang Ho Park, Anna A. De Angelis, Alexander A. Nevzorov, Chin H. Wu, and Stanley J. Opella

Three-Dimensional Structure of the Transmembrane Domain of Vpu from HIV-1 in Aligned Phospholipid Bicelles
Biophys. J. 2006 91: 3032-3042; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.087106. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Alessandro Guerini Rocco, Luca Mollica, Elisabetta Gianazza, Laura Calabresi, Guido Franceschini, Cesare R. Sirtori, and Ivano Eberini

A Model Structure for the Heterodimer apoA-I_Milano–apoA-II Supports Its Peculiar Susceptibility to Proteolysis
Biophys. J. 2006 91: 3043-3049; Published ahead of print on August 4, 2006 as doi:10.1529/biophysj.106.085886. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

B. Christoffer Lagerholm, Laurel Averett, Gabriel E. Weinreb, Ken Jacobson, and Nancy L. Thompson

Analysis Method for Measuring Submicroscopic Distances with Blinking Quantum Dots
Biophys. J. 2006 91: 3050-3060; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.105.079178. [Abstract] [Full Text] [PDF] [Supplement]  

David L. Kolin, David Ronis, and Paul W. Wiseman

k-Space Image Correlation Spectroscopy: A Method for Accurate Transport Measurements Independent of Fluorophore Photophysics
Biophys. J. 2006 91: 3061-3075; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.082768. [Abstract] [Full Text] [PDF]  

Eduard Y. Chekmenev, Peter L. Gor'kov, Timothy A. Cross, Ali M. Alaouie, and Alex I. Smirnov

Flow-Through Lipid Nanotube Arrays for Structure-Function Studies of Membrane Proteins by Solid-State NMR Spectroscopy
Biophys. J. 2006 91: 3076-3084; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.085191. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Gregor Knöner, Barbara E. Rolfe, Julie H. Campbell, Simon J. Parkin, Norman R. Heckenberg, and Halina Rubinsztein-Dunlop

Mechanics of Cellular Adhesion to Artificial Artery Templates
Biophys. J. 2006 91: 3085-3096; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.105.076125. [Abstract] [Full Text] [PDF]  

Melissa A. Dupree, Solomon R. Pollack, Elliot M. Levine, and Cato T. Laurencin

Fibroblast Growth Factor 2 Induced Proliferation in Osteoblasts and Bone Marrow Stromal Cells: A Whole Cell Model
Biophys. J. 2006 91: 3097-3112; Published ahead of print on July 21, 2006 as doi:10.1529/biophysj.106.087098. [Abstract] [Full Text] [PDF]  

Ewa Paluch, Jasper van der Gucht, Jean-François Joanny, and Cécile Sykes

Deformations in Actin Comets from Rocketing Beads
Biophys. J. 2006 91: 3113-3122; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.088054. [Abstract] [Full Text] [PDF] [supplemental]  

Yoriko Lill, Markus A. Lill, Birthe Fahrenkrog, Kyrill Schwarz-Herion, Sara Paulillo, Ueli Aebi, and Bert Hecht

Single Hepatitis-B Virus Core Capsid Binding to Individual Nuclear Pore Complexes in HeLa Cells
Biophys. J. 2006 91: 3123-3130; Published ahead of print on July 28, 2006 as doi:10.1529/biophysj.106.087650. [Abstract] [Full Text] [PDF]  

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