BIOPHYSICAL LETTERS:

Daniel J. Fish, M. Todd Horne, Robert P. Searles, Greg P. Brewood, and Albert S. Benight

Multiplex SNP Discrimination
Biophys. J. 2007 92: L89-L91; Published ahead of print on March 16, 2007 as doi:10.1529/biophysj.107.105320. [Abstract] [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

Tiffany E. Weksberg, Gillian C. Lynch, Kurt L. Krause, and B. Montgomery Pettitt

Molecular Dynamics Simulations of Trichomonas vaginalis Ferredoxin Show a Loop-Cap Transition
Biophys. J. 2007 92: 3337-3345; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.088096. [Abstract] [Full Text] [PDF] [Supplement]  

Tomasz Róg, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, and Mikko Karttunen

What Happens if Cholesterol Is Made Smoother:: Importance of Methyl Substituents in Cholesterol Ring Structure on Phosphatidylcholine–Sterol Interaction
Biophys. J. 2007 92: 3346-3357; Published ahead of print on February 9, 2007 as doi:10.1529/biophysj.106.095497. [Abstract] [Full Text] [PDF]  

D. Milutinovic and R. J. De Boer

Process Noise: An Explanation for the Fluctuations in the Immune Response during Acute Viral Infection
Biophys. J. 2007 92: 3358-3367; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.094508. [Abstract] [Full Text] [PDF]  

Ravi K. Nandigam and Daniel M. Kroll

Three-Dimensional Modeling of the Brain's ECS by Minimum Configurational Energy Packing of Fluid Vesicles
Biophys. J. 2007 92: 3368-3378; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.095547. [Abstract] [Full Text] [PDF]  

Antti J. Tanskanen, Joseph L. Greenstein, Alex Chen, Sean X. Sun, and Raimond L. Winslow

Protein Geometry and Placement in the Cardiac Dyad Influence Macroscopic Properties of Calcium-Induced Calcium Release
Biophys. J. 2007 92: 3379-3396; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.089425. [Abstract] [Full Text] [PDF]  

Yuhui Cheng, Jason K. Suen, Deqiang Zhang, Stephen D. Bond, Yongjie Zhang, Yuhua Song, Nathan A. Baker, Chandrajit L. Bajaj, Michael J. Holst, and J. Andrew McCammon

Finite Element Analysis of the Time-Dependent Smoluchowski Equation for Acetylcholinesterase Reaction Rate Calculations
Biophys. J. 2007 92: 3397-3406; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.102533. [Abstract] [Full Text] [PDF]  

Hao Song, Paul Smolen, Evyatar Av-Ron, Douglas A. Baxter, and John H. Byrne

Dynamics of a Minimal Model of Interlocked Positive and Negative Feedback Loops of Transcriptional Regulation by cAMP-Response Element Binding Proteins
Biophys. J. 2007 92: 3407-3424; Published ahead of print on February 2, 2007 as doi:10.1529/biophysj.106.096891. [Abstract] [Full Text] [PDF] [Supplement]  

Lee Bardwell, Xiufen Zou, Qing Nie, and Natalia L. Komarova

Mathematical Models of Specificity in Cell Signaling
Biophys. J. 2007 92: 3425-3441; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.090084. [Abstract] [Full Text] [PDF] [Supplement]  

Massimiliano Anselmi, Massimiliano Aschi, Alfredo Di Nola, and Andrea Amadei

Theoretical Characterization of Carbon Monoxide Vibrational Spectrum in Sperm Whale Myoglobin Distal Pocket
Biophys. J. 2007 92: 3442-3447; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.098442. [Abstract] [Full Text] [PDF]  

Chuang-Chung Lee, Arpan Nayak, Ananthakrishnan Sethuraman, Georges Belfort, and Gregory J. McRae

A Three-Stage Kinetic Model of Amyloid Fibrillation
Biophys. J. 2007 92: 3448-3458; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.098608. [Abstract] [Full Text] [PDF] [Supplement]  

Alexey V. Karnaukhov, Elena V. Karnaukhova, and James R. Williamson

Numerical Matrices Method for Nonlinear System Identification and Description of Dynamics of Biochemical Reaction Networks
Biophys. J. 2007 92: 3459-3473; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.093344. [Abstract] [Full Text] [PDF] [Supplement]  

Richard J. Naftalin, Nicholas Green, and Philip Cunningham

Lactose Permease H⁺-Lactose Symporter: Mechanical Switch or Brownian Ratchet?
Biophys. J. 2007 92: 3474-3491; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.100669. [Abstract] [Full Text] [PDF] [Supplement]  

Vitaly A. Selivanov, Stephen Krause, Josep Roca, and Marta Cascante

Modeling of Spatial Metabolite Distributions in the Cardiac Sarcomere
Biophys. J. 2007 92: 3492-3500; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.101352. [Abstract] [Full Text] [PDF]  

Matthew R. Bennett, Dmitri Volfson, Lev Tsimring, and Jeff Hasty

Transient Dynamics of Genetic Regulatory Networks
Biophys. J. 2007 92: 3501-3512; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.095638. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Jonathan Blanchet, Sylvie Pilote, and Mohamed Chahine

Acidic Residues on the Voltage-Sensor Domain Determine the Activation of the NaChBac Sodium Channel
Biophys. J. 2007 92: 3513-3523; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.090464. [Abstract] [Full Text] [PDF] [Supplement]  

Gea-Ny Tseng, Kailas D. Sonawane, Yuliya V. Korolkova, Mei Zhang, Jie Liu, Eugene V. Grishin, and H. Robert Guy

Probing the Outer Mouth Structure of the hERG Channel with Peptide Toxin Footprinting and Molecular Modeling
Biophys. J. 2007 92: 3524-3540; Published ahead of print on February 9, 2007 as doi:10.1529/biophysj.106.097360. [Abstract] [Full Text] [PDF] [Supplement]  

Derek R. Laver

Ca²⁺ Stores Regulate Ryanodine Receptor Ca²⁺ Release Channels via Luminal and Cytosolic Ca²⁺ Sites
Biophys. J. 2007 92: 3541-3555; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.099028. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Joanne Carney, J. Malcolm East, and Anthony G. Lee

Penetration of Lipid Chains into Transmembrane Surfaces of Membrane Proteins: Studies with MscL
Biophys. J. 2007 92: 3556-3563; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.102210. [Abstract] [Full Text] [PDF]  

Prabuddha Sengupta, David Holowka, and Barbara Baird

Fluorescence Resonance Energy Transfer between Lipid Probes Detects Nanoscopic Heterogeneity in the Plasma Membrane of Live Cells
Biophys. J. 2007 92: 3564-3574; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.094730. [Abstract] [Full Text] [PDF]  

Mitaben D. Lad, Fabrice Birembaut, Luke A. Clifton, Richard A. Frazier, John R. P. Webster, and Rebecca J. Green

Antimicrobial Peptide-Lipid Binding Interactions and Binding Selectivity
Biophys. J. 2007 92: 3575-3586; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.097774. [Abstract] [Full Text] [PDF]  

Lee R. Cambrea and Jennifer S. Hovis

Formation of Three-Dimensional Structures in Supported Lipid Bilayers
Biophys. J. 2007 92: 3587-3594; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.101139. [Abstract] [Full Text] [PDF] [Supplement][Supplement]  

Gary S. Ayton, Philip D. Blood, and Gregory A. Voth

Membrane Remodeling from N-BAR Domain Interactions: Insights from Multi-Scale Simulation
Biophys. J. 2007 92: 3595-3602; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.101709. [Abstract] [Full Text] [PDF] [Supplement]  

Takeshi Fukuma, Michael J. Higgins, and Suzanne P. Jarvis

Direct Imaging of Individual Intrinsic Hydration Layers on Lipid Bilayers at Ångstrom Resolution
Biophys. J. 2007 92: 3603-3609; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.100651. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Shigeru Takemori, Maki Yamaguchi, and Masako Kimura

Skinning Effects on Skeletal Muscle Myowater Probed by T₂ Relaxation of ¹H-NMR
Biophys. J. 2007 92: 3610-3614; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.094136. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Zhi-Jie Tan and Shi-Jie Chen

RNA Helix Stability in Mixed Na⁺/Mg²⁺ Solution
Biophys. J. 2007 92: 3615-3632; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.100388. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Hironari Kamikubo, Nobutaka Shimizu, Miki Harigai, Yoichi Yamazaki, Yasushi Imamoto, and Mikio Kataoka

Characterization of the Solution Structure of the M Intermediate of Photoactive Yellow Protein Using High-Angle Solution X-Ray Scattering
Biophys. J. 2007 92: 3633-3642; Published ahead of print on February 16, 2007 as doi:10.1529/biophysj.106.097287. [Abstract] [Full Text] [PDF]  

Keiichi Inoue, Motoyuki Tsuda, and Masahide Terazima

Photoreverse Reaction Dynamics of Octopus Rhodopsin
Biophys. J. 2007 92: 3643-3651; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.101741. [Abstract] [Full Text] [PDF]  

PROTEINS:

Ilya J. Finkelstein, Aaron M. Massari, and M. D. Fayer

Viscosity-Dependent Protein Dynamics
Biophys. J. 2007 92: 3652-3662. [Abstract] [Full Text] [PDF] [Supplement]  

Natalya Pertaya, Christopher B. Marshall, Carlos L. DiPrinzio, Larry Wilen, Erik S. Thomson, J. S. Wettlaufer, Peter L. Davies, and Ido Braslavsky

Fluorescence Microscopy Evidence for Quasi-Permanent Attachment of Antifreeze Proteins to Ice Surfaces
Biophys. J. 2007 92: 3663-3673; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.096297. [Abstract] [Full Text] [PDF]  

Mette M. Nielsen, Kell K. Andersen, Peter Westh, and Daniel E. Otzen

Unfolding of ß-Sheet Proteins in SDS
Biophys. J. 2007 92: 3674-3685; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.101238. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Tatyana I. Smirnova, Thomas G. Chadwick, Maxim A. Voinov, Oleg Poluektov, Johan van Tol, Andrzej Ozarowski, Gabriel Schaaf, Margaret M. Ryan, and Vytas A. Bankaitis

Local Polarity and Hydrogen Bonding Inside the Sec14p Phospholipid-Binding Cavity: High-Field Multi-Frequency Electron Paramagnetic Resonance Studies
Biophys. J. 2007 92: 3686-3695; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.097899. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Imants Zudans, Aparna Agarwal, Owe Orwar, and Stephen G. Weber

Numerical Calculations of Single-Cell Electroporation with an Electrolyte-Filled Capillary
Biophys. J. 2007 92: 3696-3705; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.097683. [Abstract] [Full Text] [PDF]  

Marie-Virginie Ehrensperger, Cyril Hanus, Christian Vannier, Antoine Triller, and Maxime Dahan

Multiple Association States between Glycine Receptors and Gephyrin Identified by SPT Analysis
Biophys. J. 2007 92: 3706-3718; Published ahead of print on February 9, 2007 as doi:10.1529/biophysj.106.095596. [Abstract] [Full Text] [PDF] [Supplement]  

Stefan Wieser, Manuel Moertelmaier, Elke Fuertbauer, Hannes Stockinger, and Gerhard J. Schütz

(Un)Confined Diffusion of CD59 in the Plasma Membrane Determined by High-Resolution Single Molecule Microscopy
Biophys. J. 2007 92: 3719-3728; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.095398. [Abstract] [Full Text] [PDF] [Supplement]  

Jennifer H. Shin, Barney K. Tam, Ricardo R. Brau, Matthew J. Lang, L. Mahadevan, and Paul Matsudaira

Force of an Actin Spring
Biophys. J. 2007 92: 3729-3733; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.099994. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

Julien G. C. Ponard, Aleksandar A. Kondratyev, and Jan P. Kucera

Mechanisms of Intrinsic Beating Variability in Cardiac Cell Cultures and Model Pacemaker Networks
Biophys. J. 2007 92: 3734-3752; Published ahead of print on February 26, 2007 as doi:10.1529/biophysj.106.091892. [Abstract] [Full Text] [PDF] [Supplement]  

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