BIOPHYSICAL LETTERS:

Ryoko Ando, Cristina Flors, Hideaki Mizuno, Johan Hofkens, and Atsushi Miyawaki

Highlighted Generation of Fluorescence Signals Using Simultaneous Two-Color Irradiation on Dronpa Mutants
Biophys. J. 2007 92: L97-L99; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.107.105882. [Abstract] [Full Text] [PDF]  

Jenny C. Y. Hsu and Christopher M. Yip

Molecular Dynamics Simulations of Indolicidin Association with Model Lipid Bilayers
Biophys. J. 2007 92: L100-L102; Published ahead of print on April 6, 2007 as doi:10.1529/biophysj.107.108050. [Abstract] [Full Text] [PDF]  

David L. Bostick and Charles L. Brooks, III

On the Equivalence Point for Ammonium (De)protonation during Its Transport through the AmtB Channel
Biophys. J. 2007 92: L103-L105; Published ahead of print on April 13, 2007 as doi:10.1529/biophysj.107.109165. [Abstract] [Full Text] [PDF] [Supplement]  

Hitoshi Nakamichi, Volker Buss, and Tetsuji Okada

Photoisomerization Mechanism of Rhodopsin and 9-cis-Rhodopsin Revealed by X-ray Crystallography
Biophys. J. 2007 92: L106-L108; Published ahead of print on April 20, 2007 as doi:10.1529/biophysj.107.108225. [Abstract] [Full Text] [PDF]  

Jin Wang, Li Xu, and Erkwang Wang

Optimal Specificity and Function for Flexible Biomolecular Recognition
Biophys. J. 2007 92: L109-L111; Published ahead of print on April 6, 2007 as doi:10.1529/biophysj.107.105551. [Abstract] [Full Text] [PDF] [Supplement]  

BIOPHYSICAL REVIEWS AND PERSPECTIVES:

Dawen Cai, Kristen J. Verhey, and Edgar Meyhöfer

Tracking Single Kinesin Molecules in the Cytoplasm of Mammalian Cells
Biophys. J. 2007 92: 4137-4144; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.100206. [Abstract] [Full Text] [PDF] [Supplement]  

NEW AND NOTABLE:

Dmitrii E. Makarov

Unraveling Individual Molecules by Mechanical Forces: Theory Meets Experiment
Biophys. J. 2007 92: 4135-4136; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.107.105650. [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

G. Richardson, L. J. Cummings, H. J. Harris, and P. O'Shea

Toward a Mathematical Model of the Assembly and Disassembly of Membrane Microdomains: Comparison with Experimental Models
Biophys. J. 2007 92: 4145-4156; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.090233. [Abstract] [Full Text] [PDF]  

Jacob Sonne, Morten Ø. Jensen, Flemming Y. Hansen, Lars Hemmingsen, and Günther H. Peters

Reparameterization of All-Atom Dipalmitoylphosphatidylcholine Lipid Parameters Enables Simulation of Fluid Bilayers at Zero Tension
Biophys. J. 2007 92: 4157-4167; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.087130. [Abstract] [Full Text] [PDF]  

Darren B. VanBeek, Matthew C. Zwier, Justin M. Shorb, and Brent P. Krueger

Fretting about FRET: Correlation between and R
Biophys. J. 2007 92: 4168-4178; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.092650. [Abstract] [Full Text] [PDF] [Supplement]  

Joanna Trylska, Valentina Tozzini, Chia-en A. Chang, and J. Andrew McCammon

HIV-1 Protease Substrate Binding and Product Release Pathways Explored with Coarse-Grained Molecular Dynamics
Biophys. J. 2007 92: 4179-4187; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.100560. [Abstract] [Full Text] [PDF] [Supplement]  

Olga K. Dudko, Jérôme Mathé, Attila Szabo, Amit Meller, and Gerhard Hummer

Extracting Kinetics from Single-Molecule Force Spectroscopy: Nanopore Unzipping of DNA Hairpins
Biophys. J. 2007 92: 4188-4195; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.102855. [Abstract] [Full Text] [PDF]  

Philippos K. Tsourkas, Nicole Baumgarth, Scott I. Simon, and Subhadip Raychaudhuri

Mechanisms of B-Cell Synapse Formation Predicted by Monte Carlo Simulation
Biophys. J. 2007 92: 4196-4208; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.094995. [Abstract] [Full Text] [PDF] [Supplement]  

Hari Leontiadou, Alan E. Mark, and Siewert-Jan Marrink

Ion Transport across Transmembrane Pores
Biophys. J. 2007 92: 4209-4215; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.101295. [Abstract] [Full Text] [PDF]  

Julia Makarova, José M. Ibarz, Santiago Canals, and Oscar Herreras

A Steady-State Model of Spreading Depression Predicts the Importance of an Unknown Conductance in Specific Dendritic Domains
Biophys. J. 2007 92: 4216-4232; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.090332. [Abstract] [Full Text] [PDF] [Supplement]  

Manami Nishizawa and Kazuhisa Nishizawa

Molecular Dynamics Simulations of a Stretch-Activated Channel Inhibitor GsMTx4 with Lipid Membranes: Two Binding Modes and Effects of Lipid Structure
Biophys. J. 2007 92: 4233-4243; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.101071. [Abstract] [Full Text] [PDF] [Supplement]  

Emilia L. Wu, Ye Mei, KeLi Han, and John Z. H. Zhang

Quantum and Molecular Dynamics Study for Binding of Macrocyclic Inhibitors to Human -Thrombin
Biophys. J. 2007 92: 4244-4253; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.099150. [Abstract] [Full Text] [PDF]  

Volker Knecht and Siewert-Jan Marrink

Molecular Dynamics Simulations of Lipid Vesicle Fusion in Atomic Detail
Biophys. J. 2007 92: 4254-4261; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.103572. [Abstract] [Full Text] [PDF]  

Marcus B. Kubitzki and Bert L. de Groot

Molecular Dynamics Simulations Using Temperature-Enhanced Essential Dynamics Replica Exchange
Biophys. J. 2007 92: 4262-4270; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.103101. [Abstract] [Full Text] [PDF]  

Nikos V. Mantzaris

From Single-Cell Genetic Architecture to Cell Population Dynamics: Quantitatively Decomposing the Effects of Different Population Heterogeneity Sources for a Genetic Network with Positive Feedback Architecture
Biophys. J. 2007 92: 4271-4288; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.100271. [Abstract] [Full Text] [PDF]  

Jian Zhou, Ian F. Thorpe, Sergey Izvekov, and Gregory A. Voth

Coarse-Grained Peptide Modeling Using a Systematic Multiscale Approach
Biophys. J. 2007 92: 4289-4303; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.094425. [Abstract] [Full Text] [PDF] [Supplement]  

Chun Chen, Jun Cui, Haizhu Lu, Rui Wang, Shuai Zhang, and Pingping Shen

Modeling of the Role of a Bax-Activation Switch in the Mitochondrial Apoptosis Decision
Biophys. J. 2007 92: 4304-4315; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.099606. [Abstract] [Full Text] [PDF]  

Jason K. Cheung, Vincent K. Shen, Jeffrey R. Errington, and Thomas M. Truskett

Coarse-Grained Strategy for Modeling Protein Stability in Concentrated Solutions. III: Directional Protein Interactions
Biophys. J. 2007 92: 4316-4324; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.099085. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Christina M. Taylor, Gregory V. Nikiforovich, and Garland R. Marshall

Defining the Interface between the C-terminal Fragment of -Transducin and Photoactivated Rhodopsin
Biophys. J. 2007 92: 4325-4334; Published ahead of print on March 9, 2007 as doi:10.1529/biophysj.106.099242. [Abstract] [Full Text] [PDF]  

Jun Hu, Tom Asbury, Srisairam Achuthan, Conggang Li, Richard Bertram, Jack R. Quine, Riqiang Fu, and Timothy A. Cross

Backbone Structure of the Amantadine-Blocked Trans-Membrane Domain M2 Proton Channel from Influenza A Virus
Biophys. J. 2007 92: 4335-4343; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.090183. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Pierre-Alexandre Boucher, Béla Joós, Martin J. Zuckermann, and Luc Fournier

Pore Formation in a Lipid Bilayer under a Tension Ramp: Modeling the Distribution of Rupture Tensions
Biophys. J. 2007 92: 4344-4355; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.092023. [Abstract] [Full Text] [PDF]  

Vesselin Nikolov, Reinhard Lipowsky, and Rumiana Dimova

Behavior of Giant Vesicles with Anchored DNA Molecules
Biophys. J. 2007 92: 4356-4368; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.100032. [Abstract] [Full Text] [PDF]  

Midhat H. Abdulreda and Vincent T. Moy

Atomic Force Microscope Studies of the Fusion of Floating Lipid Bilayers
Biophys. J. 2007 92: 4369-4378; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.096495. [Abstract] [Full Text] [PDF] [Supplement]  

MUSCLE AND CONTRACTILITY:

D. A. Martyn, L. Smith, K. L. Kreutziger, S. Xu, L. C. Yu, and M. Regnier

The Effects of Force Inhibition by Sodium Vanadate on Cross-Bridge Binding, Force Redevelopment, and Ca²⁺ Activation in Cardiac Muscle
Biophys. J. 2007 92: 4379-4390; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.096768. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Frank Wilco Bartels, Matthew McIntosh, Alexander Fuhrmann, Christoph Metzendorf, Patrik Plattner, Norbert Sewald, Dario Anselmetti, Robert Ros, and Anke Becker

Effector-Stimulated Single Molecule Protein-DNA Interactions of a Quorum-Sensing System in Sinorhizobium meliloti
Biophys. J. 2007 92: 4391-4400; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.082016. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Melinda Noronha, João C. Lima, Emanuele Paci, Helena Santos, and António L. Maçanita

Tracking Local Conformational Changes of Ribonuclease A Using Picosecond Time-Resolved Fluorescence of the Six Tyrosine Residues
Biophys. J. 2007 92: 4401-4414; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.093625. [Abstract] [Full Text] [PDF]  

PROTEINS:

Wendy Y. X. Peh, Erik Reimhult, Huey Fang Teh, Jane S. Thomsen, and Xiaodi Su

Understanding Ligand Binding Effects on the Conformation of Estrogen Receptor -DNA Complexes: A Combinational Quartz Crystal Microbalance with Dissipation and Surface Plasmon Resonance Study
Biophys. J. 2007 92: 4415-4423; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.099382. [Abstract] [Full Text] [PDF]  

Huita C. Matozo, Maria A. M. Santos, Mario de Oliveira Neto, Lucas Bleicher, Luís Mauricio T. R. Lima, Rodolfo Iuliano, Alfredo Fusco, and Igor Polikarpov

Low-Resolution Structure and Fluorescence Anisotropy Analysis of Protein Tyrosine Phosphatase Catalytic Domain
Biophys. J. 2007 92: 4424-4432; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.094961. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Mark-Anthony Bray, Nicholas A. Geisse, and Kevin Kit Parker

Multidimensional Detection and Analysis of Ca²⁺ Sparks in Cardiac Myocytes
Biophys. J. 2007 92: 4433-4443; Published ahead of print on March 16, 2007 as doi:10.1529/biophysj.106.089359. [Abstract] [Full Text] [PDF]  

Jess V. Nauman, Phil G. Campbell, Frederick Lanni, and John L. Anderson

Diffusion of Insulin-Like Growth Factor-I and Ribonuclease through Fibrin Gels
Biophys. J. 2007 92: 4444-4450; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.102699. [Abstract] [Full Text] [PDF]  

Sergey Ivanchenko, Sylvia Glaschick, Carlheinz Röcker, Franz Oswald, Jörg Wiedenmann, and G. Ulrich Nienhaus

Two-Photon Excitation and Photoconversion of EosFP in Dual-Color 4Pi Confocal Microscopy
Biophys. J. 2007 92: 4451-4457; Published ahead of print on March 23, 2007 as doi:10.1529/biophysj.106.103408. [Abstract] [Full Text] [PDF] [Supplement]  

Tamás Bányász, Ye Chen-Izu, C. W. Balke, and Leighton T. Izu

A New Approach to the Detection and Statistical Classification of Ca²⁺ Sparks
Biophys. J. 2007 92: 4458-4465; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.103069. [Abstract] [Full Text] [PDF]  

Mayumi Noto, David Keng, Iwao Teraoka, and Stephen Arnold

Detection of Protein Orientation on the Silica Microsphere Surface Using Transverse Electric/Transverse Magnetic Whispering Gallery Modes
Biophys. J. 2007 92: 4466-4472; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.103200. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Joseph Levine, Hao Yuan Kueh, and Leonid Mirny

Intrinsic Fluctuations, Robustness, and Tunability in Signaling Cycles
Biophys. J. 2007 92: 4473-4481; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.088856. [Abstract] [Full Text] [PDF]  

Alexandre Yersin, Harald Hirling, Sandor Kasas, Charles Roduit, Karina Kulangara, Giovanni Dietler, Frank Lafont, Stefan Catsicas, and Pascal Steiner

Elastic Properties of the Cell Surface and Trafficking of Single AMPA Receptors in Living Hippocampal Neurons
Biophys. J. 2007 92: 4482-4489; Published ahead of print on March 30, 2007 as doi:10.1529/biophysj.106.092742. [Abstract] [Full Text] [PDF] [Supplement]  

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