Biophysical Journal -- Table of Contents (92 [3])

BIOPHYSICAL THEORY AND MODELING:

C. Brian Roland and Eugene I. Shakhnovich: Divergent Evolution of a Structural Proteome: Phenomenological Models
Biophys. J. 2007 92: 701-716; Published ahead of print on October 27, 2006 as doi:10.1529/biophysj.106.081265. [Abstract] [Full Text] [PDF] [Supplement]

Hermioni Zouridis and Vassily Hatzimanikatis: A Model for Protein Translation: Polysome Self-Organization Leads to Maximum Protein Synthesis Rates
Biophys. J. 2007 92: 717-730; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.087825. [Abstract] [Full Text] [PDF]

Changbong Hyeon and D. Thirumalai: Mechanical Unfolding of RNA: From Hairpins to Structures with Internal Multiloops
Biophys. J. 2007 92: 731-743; Published ahead of print on October 6, 2006 as doi:10.1529/biophysj.106.093062. [Abstract] [Full Text] [PDF]

Adriana T. Dawes and Leah Edelstein-Keshet: Phosphoinositides and Rho Proteins Spatially Regulate Actin Polymerization to Initiate and Maintain Directed Movement in a One-Dimensional Model of a Motile Cell
Biophys. J. 2007 92: 744-768; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.090514. [Abstract] [Full Text] [PDF]

Christopher M. Topham and Jeremy C. Smith: Orientation Preferences of Backbone Secondary Amide Functional Groups in Peptide Nucleic Acid Complexes: Quantum Chemical Calculations Reveal an Intrinsic Preference of Cationic D-Amino Acid-Based Chiral PNA Analogues for the P-form
Biophys. J. 2007 92: 769-786; Published ahead of print on October 27, 2006 as doi:10.1529/biophysj.105.079723. [Abstract] [Full Text] [PDF] [Supplement]

Kelly E. Caputo, Dooyoung Lee, Michael R. King, and Daniel A. Hammer: Adhesive Dynamics Simulations of the Shear Threshold Effect for Leukocytes
Biophys. J. 2007 92: 787-797; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.082321. [Abstract] [Full Text] [PDF]

Ornjira Aruksakunwong, Maturos Malaisree, Panita Decha, Pornthep Sompornpisut, Vudhichai Parasuk, Somsak Pianwanit, and Supot Hannongbua: On the Lower Susceptibility of Oseltamivir to Influenza Neuraminidase Subtype N1 than Those in N2 and N9
Biophys. J. 2007 92: 798-807; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.092528. [Abstract] [Full Text] [PDF]

Narat J. Eungdamrong and Ravi Iyengar: Compartment-Specific Feedback Loop and Regulated Trafficking Can Result in Sustained Activation of Ras at the Golgi
Biophys. J. 2007 92: 808-815; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.093104. [Abstract] [Full Text] [PDF] [Supplement]

J. Krishnan and P. A. Iglesias: Receptor-Mediated and Intrinsic Polarization and Their Interaction in Chemotaxing Cells
Biophys. J. 2007 92: 816-830; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.087353. [Abstract] [Full Text] [PDF]

Anh-Tuan Dinh, Chinmay Pangarkar, Theo Theofanous, and Samir Mitragotri: Understanding Intracellular Transport Processes Pertinent to Synthetic Gene Delivery via Stochastic Simulations and Sensitivity Analyses
Biophys. J. 2007 92: 831-846; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.095521. [Abstract] [Full Text] [PDF] [Supplement]

Philip Shemella, Brian Pereira, Yiming Zhang, Patrick Van Roey, Georges Belfort, Shekhar Garde, and Saroj K. Nayak: Mechanism for Intein C-Terminal Cleavage: A Proposal from Quantum Mechanical Calculations
Biophys. J. 2007 92: 847-853; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.092049. [Abstract] [Full Text] [PDF] [Supplement]

Lintao Bu, Wonpil Im, and Charles L. Brooks, III: Membrane Assembly of Simple Helix Homo-Oligomers Studied via Molecular Dynamics Simulations
Biophys. J. 2007 92: 854-863; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.095216. [Abstract] [Full Text] [PDF]

Grace Brannigan and Frank L. H. Brown: Contributions of Gaussian Curvature and Nonconstant Lipid Volume to Protein Deformation of Lipid Bilayers
Biophys. J. 2007 92: 864-876; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.094953. [Abstract] [Full Text] [PDF]

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Huaiyu Yang, Yechun Xu, Weiliang Zhu, Kaixian Chen, and Hualiang Jiang: Detailed Mechanism for AmtB Conducting NH₄⁺/NH₃: Molecular Dynamics Simulations
Biophys. J. 2007 92: 877-885; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.090191. [Abstract] [Full Text] [PDF] [Supplement]

Marcos Sotomayor, Valeria Vásquez, Eduardo Perozo, and Klaus Schulten: Ion Conduction through MscS as Determined by Electrophysiology and Simulation
Biophys. J. 2007 92: 886-902; Published ahead of print on November 17, 2006 as doi:10.1529/biophysj.106.095232. [Abstract] [Full Text] [PDF] [Supplemental]

MEMBRANES:

Santi Esteban-Martín and Jesús Salgado: Self-Assembling of Peptide/Membrane Complexes by Atomistic Molecular Dynamics Simulations
Biophys. J. 2007 92: 903-912; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.093013. [Abstract] [Full Text] [PDF]

Jérôme Wenger, Fabien Conchonaud, José Dintinger, Laure Wawrezinieck, Thomas W. Ebbesen, Hervé Rigneault, Didier Marguet, and Pierre-François Lenne: Diffusion Analysis within Single Nanometric Apertures Reveals the Ultrafine Cell Membrane Organization
Biophys. J. 2007 92: 913-919; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.096586. [Abstract] [Full Text] [PDF] [Supplement]

Sagar A. Pandit, See-Wing Chiu, Eric Jakobsson, Ananth Grama, and H. L. Scott: Cholesterol Surrogates: A Comparison of Cholesterol and 16:0 Ceramide in POPC Bilayers
Biophys. J. 2007 92: 920-927; Published ahead of print on October 27, 2006 as doi:10.1529/biophysj.106.095034. [Abstract] [Full Text] [PDF]

NUCLEIC ACIDS:

Masamichi Tsuboi, James M. Benevides, and George J. Thomas, Jr.: The Complex of Ethidium Bromide with Genomic DNA: Structure Analysis by Polarized Raman Spectroscopy
Biophys. J. 2007 92: 928-934; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.093633. [Abstract] [Full Text] [PDF]

J. B. Fiche, A. Buhot, R. Calemczuk, and T. Livache: Temperature Effects on DNA Chip Experiments from Surface Plasmon Resonance Imaging: Isotherms and Melting Curves
Biophys. J. 2007 92: 935-946; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.097790. [Abstract] [Full Text] [PDF]

Liang Dai, Yuguang Mu, Lars Nordenskiöld, Alain Lapp, and Johan R. C. van der Maarel: Charge Structure and Counterion Distribution in Hexagonal DNA Liquid Crystal
Biophys. J. 2007 92: 947-958; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.095745. [Abstract] [Full Text] [PDF]

Natalya N. Degtyareva, Bret D. Wallace, Andrea R. Bryant, Kristine M. Loo, and Jeffrey T. Petty: Hydration Changes Accompanying the Binding of Minor Groove Ligands with DNA
Biophys. J. 2007 92: 959-965; Published ahead of print on November 17, 2006 as doi:10.1529/biophysj.106.097451. [Abstract] [Full Text] [PDF]

PROTEINS:

Sameer Varma and Eric Jakobsson: The cPLA₂ C2 ${alpha}$ Domain in Solution: Structure and Dynamics of Its Ca²⁺-activated and Cation-Free States
Biophys. J. 2007 92: 966-976; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.091850. [Abstract] [Full Text] [PDF]

Masatoshi Nukui, Luciane V. Mello, James E. Littlejohn, Barbara Setlow, Peter Setlow, Kijeong Kim, Terrance Leighton, and Mark J. Jedrzejas: Structure and Molecular Mechanism of Bacillus anthracis Cofactor-Independent Phosphoglycerate Mutase: A Crucial Enzyme for Spores and Growing Cells of Bacillus Species
Biophys. J. 2007 92: 977-988; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.093872. [Abstract] [Full Text] [PDF]

Isabelle Dragomir, Andrew Hagarman, Carmichael Wallace, and Reinhard Schweitzer-Stenner: Optical Band Splitting and Electronic Perturbations of the Heme Chromophore in Cytochrome c at Room Temperature Probed by Visible Electronic Circular Dichroism Spectroscopy
Biophys. J. 2007 92: 989-998; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.095976. [Abstract] [Full Text] [PDF]

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Wolfgang Michel, Timo Mai, Thomas Naiser, and Albrecht Ott: Optical Study of DNA Surface Hybridization Reveals DNA Surface Density as a Key Parameter for Microarray Hybridization Kinetics
Biophys. J. 2007 92: 999-1004; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.092064. [Abstract] [Full Text] [PDF]

W. Neil Everett, Hung-Jen Wu, Samartha G. Anekal, Hung-Jue Sue, and Michael A. Bevan: Diffusing Colloidal Probes of Protein and Synthetic Macromolecule Interactions
Biophys. J. 2007 92: 1005-1013; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.094102. [Abstract] [Full Text] [PDF]

L. Martyn Klassen and Ravi S. Menon: NMR Simulation Analysis of Statistical Effects on Quantifying Cerebrovascular Parameters
Biophys. J. 2007 92: 1014-1021; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.087965. [Abstract] [Full Text] [PDF]

CELL BIOPHYSICS:

De-Min Zhu, Michael L. Dustin, Christopher W. Cairo, and David E. Golan: Analysis of Two-Dimensional Dissociation Constant of Laterally Mobile Cell Adhesion Molecules
Biophys. J. 2007 92: 1022-1034; Published ahead of print on November 3, 2006 as doi:10.1529/biophysj.106.089649. [Abstract] [Full Text] [PDF]

Gaurav Girdhar, Yong Chen, and Jin-Yu Shao: Double-Tether Extraction from Human Umbilical Vein and Dermal Microvascular Endothelial Cells
Biophys. J. 2007 92: 1035-1045; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.086256. [Abstract] [Full Text] [PDF]

Marco Cosentino Lagomarsino, Catalin Tanase, Jan W. Vos, Anne Mie C. Emons, Bela M. Mulder, and Marileen Dogterom: Microtubule Organization in Three-Dimensional Confined Geometries: Evaluating the Role of Elasticity Through a Combined In Vitro and Modeling Approach
Biophys. J. 2007 92: 1046-1057; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.105.076893. [Abstract] [Full Text] [PDF] [Supplement]

V. Salnikov, Y. O. Lukyánenko, C. A. Frederick, W. J. Lederer, and V. Lukyánenko: Probing the Outer Mitochondrial Membrane in Cardiac Mitochondria with Nanoparticles
Biophys. J. 2007 92: 1058-1071; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.094318. [Abstract] [Full Text] [PDF]

Tobias Meckel, Lars Gall, Stefan Semrau, Ulrike Homann, and Gerhard Thiel: Guard Cells Elongate: Relationship of Volume and Surface Area during Stomatal Movement
Biophys. J. 2007 92: 1072-1080; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.092734. [Abstract] [Full Text] [PDF]

Léa Trichet, Otger Campàs, Cécile Sykes, and Julie Plastino: VASP Governs Actin Dynamics by Modulating Filament Anchoring
Biophys. J. 2007 92: 1081-1089; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.091884. [Abstract] [Full Text] [PDF] [Supplement]

ELECTROPHYSIOLOGY:

Jack M. Rogers, Gregory P. Walcott, James D. Gladden, Sharon B. Melnick, and Matthew W. Kay: Panoramic Optical Mapping Reveals Continuous Epicardial Reentry during Ventricular Fibrillation in the Isolated Swine Heart
Biophys. J. 2007 92: 1090-1095; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.092098. [Abstract] [Full Text] [PDF] [Supplement]

Ingmar Schoen and Peter Fromherz: The Mechanism of Extracellular Stimulation of Nerve Cells on an Electrolyte-Oxide-Semiconductor Capacitor
Biophys. J. 2007 92: 1096-1111; Published ahead of print on November 10, 2006 as doi:10.1529/biophysj.106.094763. [Abstract] [Full Text] [PDF]