BIOPHYSICAL LETTERS:

Xiang-jin Song, Peter F. Flynn, Kim A. Sharp, and A. Joshua Wand

Temperature Dependence of Fast Dynamics in Proteins
Biophys. J. 2007 92: L43-L45; Published ahead of print on January 11, 2007 as doi:10.1529/biophysj.106.102160. [Abstract] [Full Text] [PDF]  

Madoka Suzuki, Vadim Tseeb, Kotaro Oyama, and Shin'ichi Ishiwata

Microscopic Detection of Thermogenesis in a Single HeLa Cell
Biophys. J. 2007 92: L46-L48; Published ahead of print on January 19, 2007 as doi:10.1529/biophysj.106.098673. [Abstract] [Full Text] [PDF] [Supplemental]  

BIOPHYSICAL THEORY AND MODELING:

Bhavin S. Khatri, Masaru Kawakami, Katherine Byrne, D. Alastair Smith, and Tom C. B. McLeish

Entropy and Barrier-Controlled Fluctuations Determine Conformational Viscoelasticity of Single Biomolecules
Biophys. J. 2007 92: 1825-1835; Published ahead of print on December 8, 2006 as doi:10.1529/biophysj.106.097709. [Abstract] [Full Text] [PDF] [Supplemental]  

Miguel Machuqueiro and António M. Baptista

The pH-Dependent Conformational States of Kyotorphin: A Constant-pH Molecular Dynamics Study
Biophys. J. 2007 92: 1836-1845; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.092445. [Abstract] [Full Text] [PDF] [Supplemental]  

Michael Ederer and Ernst Dieter Gilles

Thermodynamically Feasible Kinetic Models of Reaction Networks
Biophys. J. 2007 92: 1846-1857; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.094094. [Abstract] [Full Text] [PDF] [Supplemental]  

Prosenjit Bagchi

Mesoscale Simulation of Blood Flow in Small Vessels
Biophys. J. 2007 92: 1858-1877; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.095042. [Abstract] [Full Text] [PDF]  

Andrey A. Gurtovenko and Ilpo Vattulainen

Ion Leakage through Transient Water Pores in Protein-Free Lipid Membranes Driven by Transmembrane Ionic Charge Imbalance
Biophys. J. 2007 92: 1878-1890; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.094797. [Abstract] [Full Text] [PDF]  

Claudia Bertonati, Barry Honig, and Emil Alexov

Poisson-Boltzmann Calculations of Nonspecific Salt Effects on Protein-Protein Binding Free Energies
Biophys. J. 2007 92: 1891-1899; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.092122. [Abstract] [Full Text] [PDF]  

Boris Guirao and Jean-François Joanny

Spontaneous Creation of Macroscopic Flow and Metachronal Waves in an Array of Cilia
Biophys. J. 2007 92: 1900-1917; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.084897. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Jong-Hoon Nam, John R. Cotton, and Wally Grant

A Virtual Hair Cell, I: Addition of Gating Spring Theory into a 3-D Bundle Mechanical Model
Biophys. J. 2007 92: 1918-1928; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.085076. [Abstract] [Full Text] [PDF]  

Jong-Hoon Nam, John R. Cotton, and Wally Grant

A Virtual Hair Cell, II: Evaluation of Mechanoelectric Transduction Parameters
Biophys. J. 2007 92: 1929-1937; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.085092. [Abstract] [Full Text] [PDF]  

Teresa K. Aman and Indira M. Raman

Subunit Dependence of Na Channel Slow Inactivation and Open Channel Block in Cerebellar Neurons
Biophys. J. 2007 92: 1938-1951; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.093500. [Abstract] [Full Text] [PDF]  

Mindaugas Rackauskas, Maria M. Kreuzberg, Mindaugas Pranevicius, Klaus Willecke, Vytas K. Verselis, and Feliksas F. Bukauskas

Gating Properties of Heterotypic Gap Junction Channels Formed of Connexins 40, 43, and 45
Biophys. J. 2007 92: 1952-1965; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.099358. [Abstract] [Full Text] [PDF] [Supplemental]  

MEMBRANES:

Yi Yang, Kathryn M. Mayer, and Jason H. Hafner

Quantitative Membrane Electrostatics with the Atomic Force Microscope
Biophys. J. 2007 92: 1966-1974; Published ahead of print on December 8, 2006 as doi:10.1529/biophysj.106.093328. [Abstract] [Full Text] [PDF]  

Dan V. Nicolau, Jr., John F. Hancock, and Kevin Burrage

Sources of Anomalous Diffusion on Cell Membranes: A Monte Carlo Study
Biophys. J. 2007 92: 1975-1987; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.105.076869. [Abstract] [Full Text] [PDF]  

Chiho Hamai, Paul S. Cremer, and Siegfried M. Musser

Single Giant Vesicle Rupture Events Reveal Multiple Mechanisms of Glass-Supported Bilayer Formation
Biophys. J. 2007 92: 1988-1999; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.093831. [Abstract] [Full Text] [PDF] [Supplemental]  

NUCLEIC ACIDS:

Pedro Licinio and João Carlos O. Guerra

Irreducible Representation for Nucleotide Sequence Physical Properties and Self-Consistency of Nearest-Neighbor Dimer Sets
Biophys. J. 2007 92: 2000-2006; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.095059. [Abstract] [Full Text] [PDF]  

Matthew W. Freyer, Robert Buscaglia, Kimberly Kaplan, Derek Cashman, Laurence H. Hurley, and Edwin A. Lewis

Biophysical Studies of the c-MYC NHE III₁ Promoter: Model Quadruplex Interactions with a Cationic Porphyrin
Biophys. J. 2007 92: 2007-2015; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.097246. [Abstract] [Full Text] [PDF] [Supplemental]  

PHOTOBIOPHYSICS:

Maria Teresa Neves-Petersen, Søren Klitgaard, Ana Sofia Leitão Carvalho, Steffen B. Petersen, Maria Raquel Aires de Barros, and Eduardo Pinho e Melo

Photophysics and Photochemistry of Horseradish Peroxidase A2 upon Ultraviolet Illumination
Biophys. J. 2007 92: 2016-2027; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.095455. [Abstract] [Full Text] [PDF]  

Keiichi Inoue, Jun Sasaki, John L. Spudich, and Masahide Terazima

Laser-Induced Transient Grating Analysis of Dynamics of Interaction between Sensory Rhodopsin II D75N and the HtrII Transducer
Biophys. J. 2007 92: 2028-2040; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.097493. [Abstract] [Full Text] [PDF]  

PROTEINS:

Daniel A. Karp, Apostolos G. Gittis, Mary R. Stahley, Carolyn A. Fitch, Wesley E. Stites, and Bertrand García-Moreno E.

High Apparent Dielectric Constant Inside a Protein Reflects Structural Reorganization Coupled to the Ionization of an Internal Asp
Biophys. J. 2007 92: 2041-2053; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.090266. [Abstract] [Full Text] [PDF]  

Ariel Kleiner and Eugene Shakhnovich

The Mechanical Unfolding of Ubiquitin through All-Atom Monte Carlo Simulation with a G-Type Potential
Biophys. J. 2007 92: 2054-2061; Published ahead of print on February 9, 2007 as doi:10.1529/biophysj.106.081257. [Abstract] [Full Text] [PDF]  

Michael H. Knaggs, Freddie R. Salsbury, Jr., Marshall Hall Edgell, and Jacquelyn S. Fetrow

Insights into Correlated Motions and Long-Range Interactions in CheY Derived from Molecular Dynamics Simulations
Biophys. J. 2007 92: 2062-2079; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.081950. [Abstract] [Full Text] [PDF]  

Mohd S. Shamsir and Andrew R. Dalby

ß-Sheet Containment by Flanking Prolines: Molecular Dynamic Simulations of the Inhibition of ß-Sheet Elongation by Proline Residues in Human Prion Protein
Biophys. J. 2007 92: 2080-2089; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.092320. [Abstract] [Full Text] [PDF]  

Tao Xie, Dongsheng Liu, Yingang Feng, Lu Shan, and Jinfeng Wang

Folding Stability and Cooperativity of the Three Forms of 1–110 Residues Fragment of Staphylococcal Nuclease
Biophys. J. 2007 92: 2090-2107; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.092155. [Abstract] [Full Text] [PDF] [Supplemental]  

Uwe Freudenberg, Sven H. Behrens, Petra B. Welzel, Martin Müller, Milauscha Grimmer, Katrin Salchert, Tilman Taeger, Kati Schmidt, Wolfgang Pompe, and Carsten Werner

Electrostatic Interactions Modulate the Conformation of Collagen I
Biophys. J. 2007 92: 2108-2119; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.094284. [Abstract] [Full Text] [PDF]  

Hossein Fazelinia, Patrick C. Cirino, and Costas D. Maranas

Extending Iterative Protein Redesign and Optimization (IPRO) in Protein Library Design for Ligand Specificity
Biophys. J. 2007 92: 2120-2130; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.096016. [Abstract] [Full Text] [PDF]  

Giovanni B. Strambini and Margherita Gonnelli

Protein Stability in Ice
Biophys. J. 2007 92: 2131-2138; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.099531. [Abstract] [Full Text] [PDF]  

Noga Kozer, Yosef Yehuda Kuttner, Gilad Haran, and Gideon Schreiber

Protein-Protein Association in Polymer Solutions: From Dilute to Semidilute to Concentrated
Biophys. J. 2007 92: 2139-2149; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.097717. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

E. Le Moal, E. Fort, S. Lévêque-Fort, F. P. Cordelières, M.-P. Fontaine-Aupart, and C. Ricolleau

Enhanced Fluorescence Cell Imaging with Metal-Coated Slides
Biophys. J. 2007 92: 2150-2161; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.096750. [Abstract] [Full Text] [PDF]  

Naofumi Terada, Togo Shimozawa, Shin'ichi Ishiwata, and Takashi Funatsu

Size Distribution of Linear and Helical Polymers in Actin Solution Analyzed by Photon Counting Histogram
Biophys. J. 2007 92: 2162-2171; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.098871. [Abstract] [Full Text] [PDF] [Supplemental]  

Kevin Braeckmans, Katrien Remaut, Roosmarijn E. Vandenbroucke, Bart Lucas, Stefaan C. De Smedt, and Joseph Demeester

Line FRAP with the Confocal Laser Scanning Microscope for Diffusion Measurements in Small Regions of 3-D Samples
Biophys. J. 2007 92: 2172-2183; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.099838. [Abstract] [Full Text] [PDF]  

Ted A. Laurence, Youngeun Kwon, Eric Yin, Christopher W. Hollars, Julio A. Camarero, and Daniel Barsky

Correlation Spectroscopy of Minor Fluorescent Species: Signal Purification and Distribution Analysis
Biophys. J. 2007 92: 2184-2198; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.093591. [Abstract] [Full Text] [PDF] [Supplemental]  

G. I. Mashanov and J. E. Molloy

Automatic Detection of Single Fluorophores in Live Cells
Biophys. J. 2007 92: 2199-2211; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.081117. [Abstract] [Full Text] [PDF]  

Christopher B. Raub, Vinod Suresh, Tatiana Krasieva, Julia Lyubovitsky, Justin D. Mih, Andrew J. Putnam, Bruce J. Tromberg, and Steven C. George

Noninvasive Assessment of Collagen Gel Microstructure and Mechanics Using Multiphoton Microscopy
Biophys. J. 2007 92: 2212-2222; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.097998. [Abstract] [Full Text] [PDF]  

Juraj Topolancik and Frank Vollmer

Photoinduced Transformations in Bacteriorhodopsin Membrane Monitored with Optical Microcavities
Biophys. J. 2007 92: 2223-2229; Published ahead of print on January 5, 2007 as doi:10.1529/biophysj.106.098806. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Nicholas C. Darnton and Howard C. Berg

Force-Extension Measurements on Bacterial Flagella: Triggering Polymorphic Transformations
Biophys. J. 2007 92: 2230-2236; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.094037. [Abstract] [Full Text] [PDF]  

Mini Jose, Deepak K. Nair, Carsten Reissner, Roland Hartig, and Werner Zuschratter

Photophysics of Clomeleon by FLIM: Discriminating Excited State Reactions along Neuronal Development
Biophys. J. 2007 92: 2237-2254; Published ahead of print on December 15, 2006 as doi:10.1529/biophysj.106.092841. [Abstract] [Full Text] [PDF]  

Adam Curtis, Lucia Sokolikova-Csaderova, and Gregor Aitchison

Measuring Cell Forces by a Photoelastic Method
Biophys. J. 2007 92: 2255-2261; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.088849. [Abstract] [Full Text] [PDF]  

Janosch Lichtenberger and Peter Fromherz

A Cell-Semiconductor Synapse: Transistor Recording of Vesicle Release in Chromaffin Cells
Biophys. J. 2007 92: 2262-2268; Published ahead of print on December 22, 2006 as doi:10.1529/biophysj.106.096446. [Abstract] [Full Text] [PDF]  

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