BIOPHYSICAL THEORY AND MODELING:

Mano Ram Maurya and Shankar Subramaniam

A Kinetic Model for Calcium Dynamics in RAW 264.7 Cells: 1. Mechanisms, Parameters, and Subpopulational Variability
Biophys. J. 2007 93: 709-728; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.097469. [Abstract] [Full Text] [PDF] [Supplement]  

Mano Ram Maurya and Shankar Subramaniam

A Kinetic Model for Calcium Dynamics in RAW 264.7 Cells: 2. Knockdown Response and Long-Term Response
Biophys. J. 2007 93: 729-740; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.097501. [Abstract] [Full Text] [PDF]  

Trushar R. Patel, Stephen E. Harding, Anna Ebringerova, Marcin Deszczynski, Zdenka Hromadkova, Adiaratou Togola, Berit Smestad Paulsen, Gordon A. Morris, and Arthur J. Rowe

Weak Self-Association in a Carbohydrate System
Biophys. J. 2007 93: 741-749; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.100891. [Abstract] [Full Text] [PDF]  

Xiuli Dong, Qi Wang, Tao Wu, and Haihua Pan

Understanding Adsorption-Desorption Dynamics of BMP-2 on Hydroxyapatite (001) Surface
Biophys. J. 2007 93: 750-759. [Abstract] [Full Text] [PDF]  

Bradley M. Palmer, Takeki Suzuki, Yuan Wang, William D. Barnes, Mark S. Miller, and David W. Maughan

Two-State Model of Acto-Myosin Attachment-Detachment Predicts C-Process of Sinusoidal Analysis
Biophys. J. 2007 93: 760-769; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.101626. [Abstract] [Full Text] [PDF]  

Benjamin Bouvier and Helmut Grubmüller

A Molecular Dynamics Study of Slow Base Flipping in DNA using Conformational Flooding
Biophys. J. 2007 93: 770-786; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.091751. [Abstract] [Full Text] [PDF] [Supplement]  

Hong-Bang Cheng, Mathava Kumar, and Jih-Gaw Lin

Development of Linear Irreversible Thermodynamic Model for Oxidation Reduction Potential in Environmental Microbial System
Biophys. J. 2007 93: 787-794; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.103507. [Abstract] [Full Text] [PDF]  

Anders E. Wallin, Ari Salmi, and Roman Tuma

Step Length Measurement—Theory and Simulation for Tethered Bead Constant-Force Single Molecule Assay
Biophys. J. 2007 93: 795-805; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.097915. [Abstract] [Full Text] [PDF]  

Marcelo Behar, Nan Hao, Henrik G. Dohlman, and Timothy C. Elston

Mathematical and Computational Analysis of Adaptation via Feedback Inhibition in Signal Transduction Pathways
Biophys. J. 2007 93: 806-821; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.107.107516. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

Catherine E. Morris and Peter F. Juranka

Nav Channel Mechanosensitivity: Activation and Inactivation Accelerate Reversibly with Stretch
Biophys. J. 2007 93: 822-833; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.101246. [Abstract] [Full Text] [PDF]  

Lin-ling He, Yun Zhang, Yu-hang Chen, Yoichi Yamada, and Jian Yang

Functional Modularity of the ß-Subunit of Voltage-Gated Ca²⁺ Channels
Biophys. J. 2007 93: 834-845; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.101691. [Abstract] [Full Text] [PDF] [Supplement]  

T. Riedel, G. Schmalzing, and F. Markwardt

Influence of Extracellular Monovalent Cations on Pore and Gating Properties of P2X₇ Receptor-Operated Single-Channel Currents
Biophys. J. 2007 93: 846-858; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.103614. [Abstract] [Full Text] [PDF] [Supplement]  

David J. Cadugan and Anthony Auerbach

Conformational Dynamics of the M3 Transmembrane Helix during Acetylcholine Receptor Channel Gating
Biophys. J. 2007 93: 859-865; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.107.105171. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Xiaoyun Chen, Jie Wang, Cornelius B. Kristalyn, and Zhan Chen

Real-Time Structural Investigation of a Lipid Bilayer during Its Interaction with Melittin Using Sum Frequency Generation Vibrational Spectroscopy
Biophys. J. 2007 93: 866-875; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.099739. [Abstract] [Full Text] [PDF] [Supplement]  

Yinling Li and Lukas K. Tamm

Structure and Plasticity of the Human Immunodeficiency Virus gp41 Fusion Domain in Lipid Micelles and Bilayers
Biophys. J. 2007 93: 876-885; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.106.102335. [Abstract] [Full Text] [PDF] [Supplement]  

MUSCLE AND CONTRACTILITY:

Norito Kotani, Hitoshi Sakakibara, Stan A. Burgess, Hiroaki Kojima, and Kazuhiro Oiwa

Mechanical Properties of Inner-Arm Dynein-F (Dynein I1) Studied With In Vitro Motility Assays
Biophys. J. 2007 93: 886-894; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.101964. [Abstract] [Full Text] [PDF]  

PROTEINS:

Kumiko Hayashi and Mitsunori Takano

Violation of the Fluctuation-Dissipation Theorem in a Protein System
Biophys. J. 2007 93: 895-901; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.100487. [Abstract] [Full Text] [PDF]  

Oleg Galkin, Weichun Pan, Luis Filobelo, Rhoda Elison Hirsch, Ronald L. Nagel, and Peter G. Vekilov

Two-Step Mechanism of Homogeneous Nucleation of Sickle Cell Hemoglobin Polymers
Biophys. J. 2007 93: 902-913; Published ahead of print on April 20, 2007 as doi:10.1529/biophysj.106.103705. [Abstract] [Full Text] [PDF]  

Howard D. White and Alison E. Ashcroft

Real-Time Measurement of Myosin–Nucleotide Noncovalent Complexes by Electrospray Ionization Mass Spectrometry
Biophys. J. 2007 93: 914-919; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.101618. [Abstract] [Full Text] [PDF]  

Lei Yang, Guang Song, and Robert L. Jernigan

How Well Can We Understand Large-Scale Protein Motions Using Normal Modes of Elastic Network Models?
Biophys. J. 2007 93: 920-929; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.095927. [Abstract] [Full Text] [PDF] [Supplement]  

Johannes Preiner, Harald Janovjak, Christian Rankl, Helene Knaus, David A. Cisneros, Alexej Kedrov, Ferry Kienberger, Daniel J. Muller, and Peter Hinterdorfer

Free Energy of Membrane Protein Unfolding Derived from Single-Molecule Force Measurements
Biophys. J. 2007 93: 930-937; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.096982. [Abstract] [Full Text] [PDF] [Supplement]  

Mihaela E. Sardiu, Margaret S. Cheung, and Yi-Kuo Yu

Cysteine-Cysteine Contact Preference Leads to Target-Focusing in Protein Folding
Biophys. J. 2007 93: 938-951. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Sailong Xu, Mingdong Dong, Xiudong Liu, Kenneth A. Howard, Jørgen Kjems, and Flemming Besenbacher

Direct Force Measurements between siRNA and Chitosan Molecules Using Force Spectroscopy
Biophys. J. 2007 93: 952-959; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.093229. [Abstract] [Full Text] [PDF]  

P. Müller-Buschbaum, R. Gebhardt, S. V. Roth, E. Metwalli, and W. Doster

Effect of Calcium Concentration on the Structure of Casein Micelles in Thin Films
Biophys. J. 2007 93: 960-968; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.106385. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Fabien Nadrigny, Dongdong Li, Klaus Kemnitz, Nicole Ropert, Annette Koulakoff, Stephanie Rudolph, Marco Vitali, Christian Giaume, Frank Kirchhoff, and Martin Oheim

Systematic Colocalization Errors between Acridine Orange and EGFP in Astrocyte Vesicular Organelles
Biophys. J. 2007 93: 969-980; Published ahead of print on April 6, 2007 as doi:10.1529/biophysj.106.102673. [Abstract] [Full Text] [PDF]  

A. C. Wirtz, M. C. van Hemert, J. Lugtenburg, H. A. Frank, and E. J. J. Groenen

Two Stereoisomers of Spheroidene in the Rhodobacter sphaeroides R26 Reaction Center: A DFT Analysis of Resonance Raman Spectra
Biophys. J. 2007 93: 981-991. [Abstract] [Full Text] [PDF] [Supplement]  

Jonathan A. Palero, Henriëtte S. de Bruijn, Angélique van der Ploeg van den Heuvel, Henricus J. C. M. Sterenborg, and Hans C. Gerritsen

Spectrally Resolved Multiphoton Imaging of In Vivo and Excised Mouse Skin Tissues
Biophys. J. 2007 93: 992-1007; Published ahead of print on April 20, 2007 as doi:10.1529/biophysj.106.099457. [Abstract] [Full Text] [PDF]  

Olivier Julien, Yin-Biao Sun, Andrea C. Knowles, Birgit D. Brandmeier, Robert E. Dale, David R. Trentham, John E. T. Corrie, Brian D. Sykes, and Malcolm Irving

Toward Protein Structure In Situ: Comparison of Two Bifunctional Rhodamine Adducts of Troponin C
Biophys. J. 2007 93: 1008-1020; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.103879. [Abstract] [Full Text] [PDF] [Supplement]  

Saveez Saffarian, Yu Li, Elliot L. Elson, and Linda J. Pike

Oligomerization of the EGF Receptor Investigated by Live Cell Fluorescence Intensity Distribution Analysis
Biophys. J. 2007 93: 1021-1031; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.105494. [Abstract] [Full Text] [PDF] [Supplement]  

Marco Hoeb, Joachim O. Rädler, Stefan Klein, Martin Stutzmann, and Martin S. Brandt

Light-Induced Dielectrophoretic Manipulation of DNA
Biophys. J. 2007 93: 1032-1038; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.101188. [Abstract] [Full Text] [PDF]  

Rebecca M. Williams, Warren R. Zipfel, Michelle L. Tinsley, and Cornelia E. Farnum

Solute Transport in Growth Plate Cartilage: In Vitro and In Vivo
Biophys. J. 2007 93: 1039-1050; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.097675. [Abstract] [Full Text] [PDF]  

Ann-Katrin Awizio, Franco Onofri, Fabio Benfenati, and Elmar Bonaccurso

Influence of Synapsin I on Synaptic Vesicles: An Analysis by Force-Volume Mode of the Atomic Force Microscope and Dynamic Light Scattering
Biophys. J. 2007 93: 1051-1060; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.104406. [Abstract] [Full Text] [PDF]  

Senkei Umehara, Ippei Inoue, Yuichi Wakamoto, and Kenji Yasuda

Origin of Individuality of Two Daughter Cells during the Division Process Examined by the Simultaneous Measurement of Growth and Swimming Property Using an On-Chip Single-Cell Cultivation System
Biophys. J. 2007 93: 1061-1067; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.098061. [Abstract] [Full Text] [PDF] [Supplement]  

Ordel J. Brown, Santiago A. Lopez, A. Oveta Fuller, and Theodore Goodson, III

Formation and Reversible Dissociation of Coiled Coil of Peptide to the C-Terminus of the HSV B5 Protein: A Time-Resolved Spectroscopic Analysis
Biophys. J. 2007 93: 1068-1078; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.100958. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Songwan Jin, Peter M. Haggie, and A. S. Verkman

Single-Particle Tracking of Membrane Protein Diffusion in a Potential: Simulation, Detection, and Application to Confined Diffusion of CFTR Cl^– Channels
Biophys. J. 2007 93: 1079-1088; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.102244. [Abstract] [Full Text] [PDF] [Supplement]  

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