BIOPHYSICAL LETTERS:

Lin Han, Delphine Dean, Pan Mao, Christine Ortiz, and Alan J. Grodzinsky

Nanoscale Shear Deformation Mechanisms of Opposing Cartilage Aggrecan Macromolecules
Biophys. J. 2007 93: L23-L25; Published ahead of print on June 22, 2007 as doi:10.1529/biophysj.107.114025. [Abstract] [Full Text] [PDF]  

Jiang Jiang, Kenneth B. Eisenthal, and Rafael Yuste

Second Harmonic Generation in Neurons: Electro-Optic Mechanism of Membrane Potential Sensitivity
Biophys. J. 2007 93: L26-L28; Published ahead of print on June 29, 2007 as doi:10.1529/biophysj.107.111021. [Abstract] [Full Text] [PDF] [Supplement]  

BIOPHYSICAL THEORY AND MODELING:

E. B. Zhulina and F. A. M. Leermakers

A Self-Consistent Field Analysis of the Neurofilament Brush with Amino-Acid Resolution
Biophys. J. 2007 93: 1421-1430; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.106.095323. [Abstract] [Full Text] [PDF]  

Wei Fu, Jianhua Shen, Xiaomin Luo, Weiliang Zhu, Jiagao Cheng, Kunqian Yu, James M. Briggs, Guozhang Jin, Kaixian Chen, and Hualiang Jiang

Dopamine D1 Receptor Agonist and D2 Receptor Antagonist Effects of the Natural Product (–)–Stepholidine: Molecular Modeling and Dynamics Simulations
Biophys. J. 2007 93: 1431-1441; Published ahead of print on April 27, 2007 as doi:10.1529/biophysj.106.088500. [Abstract] [Full Text] [PDF] [Supplement]  

Andrzej Wierzbicki, Pranav Dalal, Thomas E. Cheatham, III, Jared E. Knickelbein, A. D. J. Haymet, and Jeffry D. Madura

Antifreeze Proteins at the Ice/Water Interface: Three Calculated Discriminating Properties for Orientation of Type I Proteins
Biophys. J. 2007 93: 1442-1451; Published ahead of print on May 25, 2007 as doi:10.1529/biophysj.107.105189. [Abstract] [Full Text] [PDF]  

E. B. Zhulina and F. A. M. Leermakers

Effect of the Ionic Strength and pH on the Equilibrium Structure of a Neurofilament Brush
Biophys. J. 2007 93: 1452-1463; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.107.104695. [Abstract] [Full Text] [PDF]  

Zhongqiao Hu, Jianwen Jiang, and Raj Rajagopalan

Effects of Macromolecular Crowding on Biochemical Reaction Equilibria: A Molecular Thermodynamic Perspective
Biophys. J. 2007 93: 1464-1473; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.107.104646. [Abstract] [Full Text] [PDF]  

J. R. Exequiel T. Pineda, Robert Callender, and Steven D. Schwartz

Ligand Binding and Protein Dynamics in Lactate Dehydrogenase
Biophys. J. 2007 93: 1474-1483; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.106146. [Abstract] [Full Text] [PDF]  

Zhuqing Zhang, Hao Chen, Hongjun Bai, and Luhua Lai

Molecular Dynamics Simulations on the Oligomer-Formation Process of the GNNQQNY Peptide from Yeast Prion Protein Sup35
Biophys. J. 2007 93: 1484-1492; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.100537. [Abstract] [Full Text] [PDF] [Supplement]  

Ilia A. Solov'yov and Walter Greiner

Theoretical Analysis of an Iron Mineral-Based Magnetoreceptor Model in Birds
Biophys. J. 2007 93: 1493-1509; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.105098. [Abstract] [Full Text] [PDF]  

Hongyi Zhou and Jeffrey Skolnick

Ab Initio Protein Structure Prediction Using Chunk-TASSER
Biophys. J. 2007 93: 1510-1518; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.109959. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING:

James R. Groome, Margaret C. Dice, Esther Fujimoto, and Peter C. Ruben

Charge Immobilization of Skeletal Muscle Na⁺ Channels: Role of Residues in the Inactivation Linker
Biophys. J. 2007 93: 1519-1533; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.106.102079. [Abstract] [Full Text] [PDF]  

D. Parthimos, R. E. Haddock, C. E. Hill, and T. M. Griffith

Dynamics of A Three-Variable Nonlinear Model of Vasomotion: Comparison of Theory and Experiment
Biophys. J. 2007 93: 1534-1556; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.106278. [Abstract] [Full Text] [PDF]  

Denis B. Tikhonov and Boris S. Zhorov

Sodium Channels: Ionic Model of Slow Inactivation and State-Dependent Drug Binding
Biophys. J. 2007 93: 1557-1570; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.100248. [Abstract] [Full Text] [PDF]  

Shasikala Narayan, Debra L. Wyatt, David S. Crumrine, and Samuel Cukierman

Proton Transfer in Water Wires in Proteins: Modulation by Local Constraint and Polarity in Gramicidin A Channels
Biophys. J. 2007 93: 1571-1579; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.109231. [Abstract] [Full Text] [PDF]  

MEMBRANES:

A. Aroti, E. Leontidis, M. Dubois, and T. Zemb

Effects of Monovalent Anions of the Hofmeister Series on DPPC Lipid Bilayers Part I: Swelling and In-Plane Equations of State
Biophys. J. 2007 93: 1580-1590; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.094482. [Abstract] [Full Text] [PDF] [Supplement]  

E. Leontidis, A. Aroti, L. Belloni, M. Dubois, and T. Zemb

Effects of Monovalent Anions of the Hofmeister Series on DPPC Lipid Bilayers Part II: Modeling the Perpendicular and Lateral Equation-of-State
Biophys. J. 2007 93: 1591-1607; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.109264. [Abstract] [Full Text] [PDF] [Supplement]  

Kunihiko Iwamoto, Tomohiro Hayakawa, Motohide Murate, Asami Makino, Kazuki Ito, Tetsuro Fujisawa, and Toshihide Kobayashi

Curvature-Dependent Recognition of Ethanolamine Phospholipids by Duramycin and Cinnamycin
Biophys. J. 2007 93: 1608-1619; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.101584. [Abstract] [Full Text] [PDF] [Supplement]  

Michel Roux, Stéphane Moutard, Bruno Perly, and Florence Djedaini-Pilard

Lipid Lateral Segregation Driven by Diacyl Cyclodextrin Interactions at the Membrane Surface
Biophys. J. 2007 93: 1620-1629; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.099945. [Abstract] [Full Text] [PDF]  

Lee R. Cambrea, Farzin Haque, Jeremy L. Schieler, Jean-Christophe Rochet, and Jennifer S. Hovis

Effect of Ions on the Organization of Phosphatidylcholine/Phosphatidic Acid Bilayers
Biophys. J. 2007 93: 1630-1638; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.104224. [Abstract] [Full Text] [PDF]  

Bruno M. Castro, Rodrigo F. M. de Almeida, Liana C. Silva, Alexander Fedorov, and Manuel Prieto

Formation of Ceramide/Sphingomyelin Gel Domains in the Presence of an Unsaturated Phospholipid: A Quantitative Multiprobe Approach
Biophys. J. 2007 93: 1639-1650; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.107714. [Abstract] [Full Text] [PDF]  

Sara Pistolesi, Rebecca Pogni, and Jimmy B. Feix

Membrane Insertion and Bilayer Perturbation by Antimicrobial Peptide CM15
Biophys. J. 2007 93: 1651-1660; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.104034. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Marc I. Glazer, Jacqueline A. Fidanza, Glenn H. McGall, Mark O. Trulson, Jonathan E. Forman, and Curtis W. Frank

Kinetics of Oligonucleotide Hybridization to DNA Probe Arrays on High-Capacity Porous Silica Substrates
Biophys. J. 2007 93: 1661-1676; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.103275. [Abstract] [Full Text] [PDF]  

PROTEINS:

Linlin Qiu, Miriam Gulotta, and Robert Callender

Lactate Dehydrogenase Undergoes a Substantial Structural Change to Bind its Substrate
Biophys. J. 2007 93: 1677-1686; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.109397. [Abstract] [Full Text] [PDF]  

Daniel Hoersch, Harald Otto, Chandra P. Joshi, Berthold Borucki, Michael A. Cusanovich, and Maarten P. Heyn

Role of a Conserved Salt Bridge between the PAS Core and the N-Terminal Domain in the Activation of the Photoreceptor Photoactive Yellow Protein
Biophys. J. 2007 93: 1687-1699; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.106633. [Abstract] [Full Text] [PDF]  

Qiaoli Liang, Gregory T. Miller, Chanda A. Beeghley, Coyner B. Graf, and Russell Timkovich

Solution Conformation of the His-47 to Ala-47 Mutant of Pseudomonas stutzeri ZoBell Ferrocytochrome c-551
Biophys. J. 2007 93: 1700-1706; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.102772. [Abstract] [Full Text] [PDF] [Supplement]  

Javier Santos, Valeria A. Risso, Mauricio P. Sica, and Mario R. Ermácora

Effects of Serine-to-Cysteine Mutations on ß-Lactamase Folding
Biophys. J. 2007 93: 1707-1718; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.103804. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Eric H. Lee, Jen Hsin, Olga Mayans, and Klaus Schulten

Secondary and Tertiary Structure Elasticity of Titin Z1Z2 and a Titin Chain Model
Biophys. J. 2007 93: 1719-1735; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.105528. [Abstract] [Full Text] [PDF] [Supplement]  

Mauro Vaccaro, Antonella Accardo, Gerardino D'Errico, Karin Schillén, Aurel Radulescu, Diego Tesauro, Giancarlo Morelli, and Luigi Paduano

Peptides and Gd Complexes Containing Colloidal Assemblies as Tumor-Specific Contrast Agents in MRI: Physicochemical Characterization
Biophys. J. 2007 93: 1736-1746; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.107417. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Euiheon Chung, Daekeun Kim, Yan Cui, Yang-Hyo Kim, and Peter T. C. So

Two-Dimensional Standing Wave Total Internal Reflection Fluorescence Microscopy: Superresolution Imaging of Single Molecular and Biological Specimens
Biophys. J. 2007 93: 1747-1757; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.097907. [Abstract] [Full Text] [PDF] [Supplement]  

Yong Jiang, Changhong Ke, Piotr A. Mieczkowski, and Piotr E. Marszalek

Detecting Ultraviolet Damage in Single DNA Molecules by Atomic Force Microscopy
Biophys. J. 2007 93: 1758-1767; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.107.108209. [Abstract] [Full Text] [PDF]  

Adam Taller, Bernd Grohe, Kem A. Rogers, Harvey A. Goldberg, and Graeme K. Hunter

Specific Adsorption of Osteopontin and Synthetic Polypeptides to Calcium Oxalate Monohydrate Crystals
Biophys. J. 2007 93: 1768-1777; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.106.101881. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Jurek W. Dobrucki, Dorota Feret, and Anna Noatynska

Scattering of Exciting Light by Live Cells in Fluorescence Confocal Imaging: Phototoxic Effects and Relevance for FRAP Studies
Biophys. J. 2007 93: 1778-1786; Published ahead of print on April 6, 2007 as doi:10.1529/biophysj.106.096636. [Abstract] [Full Text] [PDF] [Supplement]  

Peter J.M. van Haastert and Marten Postma

Biased Random Walk by Stochastic Fluctuations of Chemoattractant-Receptor Interactions at the Lower Limit of Detection
Biophys. J. 2007 93: 1787-1796; Published ahead of print on May 18, 2007 as doi:10.1529/biophysj.107.104356. [Abstract] [Full Text] [PDF]  

Matt J. Kipper, Hynda K. Kleinman, and Francis W. Wang

New Method for Modeling Connective-Tissue Cell Migration: Improved Accuracy on Motility Parameters
Biophys. J. 2007 93: 1797-1808; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.096800. [Abstract] [Full Text] [PDF]  

Jie Fang and K. H. Iwasa

Effects of Chlorpromazine and Trinitrophenol on the Membrane Motor of Outer Hair Cells
Biophys. J. 2007 93: 1809-1817; Published ahead of print on May 4, 2007 as doi:10.1529/biophysj.106.100834. [Abstract] [Full Text] [PDF]  

Wallace F. Marshall

Stability and Robustness of an Organelle Number Control System: Modeling and Measuring Homeostatic Regulation of Centriole Abundance
Biophys. J. 2007 93: 1818-1833; Published ahead of print on May 11, 2007 as doi:10.1529/biophysj.107.107052. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Huamei He, Maryam M. Javadpour, Farhana Latif, Jil C. Tardiff, and Joanne S. Ingwall

R-92L and R-92W Mutations in Cardiac Troponin T Lead to Distinct Energetic Phenotypes in Intact Mouse Hearts
Biophys. J. 2007 93: 1834-1844; Published ahead of print on May 25, 2007 as doi:10.1529/biophysj.107.107557. [Abstract] [Full Text] [PDF] [Supplement]  

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