BIOPHYSICAL LETTERS:

Shuying Wang, Michael T. Overgaard, YaoXiong Hu, and David B. McKay

The Bacillus subtilis RNA Helicase YxiN is Distended in Solution
Biophys. J. 2008 94: L01-L03; Published ahead of print on October 19, 2007 as doi:10.1529/biophysj.107.120709. [Abstract] [Full Text] [PDF] [Supplement]  

NEW AND NOTABLE:

Shantanu Sharma and Nikolay V. Dokholyan

DNA Sequence Mediates Nucleosome Structure and Stability
Biophys. J. 2008 94: 1-3; Published ahead of print on October 12, 2007 as doi:10.1529/biophysj.107.119172. [Full Text] [PDF]  

Wallace F. Marshall

Don't Blink: Observing the Ultra-Fast Contraction of Spasmonemes
Biophys. J. 2008 94: 4-5; Published ahead of print on October 12, 2007 as doi:10.1529/biophysj.107.118166. [Full Text] [PDF]  

BIOPHYSICAL THEORY AND MODELING:

Joanna I. Sulkowska and Marek Cieplak

Stretching to Understand Proteins—A Survey of the Protein Data Bank
Biophys. J. 2008 94: 6-13; Published ahead of print on August 17, 2007 as doi:10.1529/biophysj.107.105973. [Abstract] [Full Text] [PDF]  

Lars Linderoth, Thomas L. Andresen, Kent Jørgensen, Robert Madsen, and Günther H. Peters

Molecular Basis of Phospholipase A₂ Activity toward Phospholipids with sn-1 Substitutions
Biophys. J. 2008 94: 14-26; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.110106. [Abstract] [Full Text] [PDF]  

Branimir Bertosa, Biserka Kojic-Prodic, Rebecca C. Wade, and Sanja Tomic

Mechanism of Auxin Interaction with Auxin Binding Protein (ABP1): A Molecular Dynamics Simulation Study
Biophys. J. 2008 94: 27-37; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.109025. [Abstract] [Full Text] [PDF]  

Guang-Jiu Zhao and Ke-Li Han

Site-Specific Solvation of the Photoexcited Protochlorophyllide a in Methanol: Formation of the Hydrogen-Bonded Intermediate State Induced by Hydrogen-Bond Strengthening
Biophys. J. 2008 94: 38-46; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.113738. [Abstract] [Full Text] [PDF]  

Tong Zhao and Aaron R. Dinner

Apparent Directional Scanning for DNA Repair
Biophys. J. 2008 94: 47-52; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.110619. [Abstract] [Full Text] [PDF]  

Giovanni Zifarelli, Paolo Soliani, and Michael Pusch

Buffered Diffusion around a Spherical Proton Pumping Cell: A Theoretical Analysis
Biophys. J. 2008 94: 53-62; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.111310. [Abstract] [Full Text] [PDF]  

Christophe Yamahata, Dominique Collard, Tetsuya Takekawa, Momoko Kumemura, Gen Hashiguchi, and Hiroyuki Fujita

Humidity Dependence of Charge Transport through DNA Revealed by Silicon-Based Nanotweezers Manipulation
Biophys. J. 2008 94: 63-70; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.115980. [Abstract] [Full Text] [PDF]  

Marilisa Neri, Marc Baaden, Vincenzo Carnevale, Claudio Anselmi, Amos Maritan, and Paolo Carloni

Microseconds Dynamics Simulations of the Outer-Membrane Protease T
Biophys. J. 2008 94: 71-78; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.116301. [Abstract] [Full Text] [PDF] [Supplement]  

Canan Atilgan, Ayse Ozlem Aykut, and Ali Rana Atilgan

How a Vicinal Layer of Solvent Modulates the Dynamics of Proteins
Biophys. J. 2008 94: 79-89; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.116426. [Abstract] [Full Text] [PDF]  

Gernot Guigas and Matthias Weiss

Sampling the Cell with Anomalous Diffusion—The Discovery of Slowness
Biophys. J. 2008 94: 90-94; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.117044. [Abstract] [Full Text] [PDF]  

Shin-ichi Fujiwara and Takashi Amisaki

Identification of High Affinity Fatty Acid Binding Sites on Human Serum Albumin by MM-PBSA Method
Biophys. J. 2008 94: 95-103; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.111377. [Abstract] [Full Text] [PDF] [Supplement]  

MEMBRANES:

Anna Celli, Sabrina Beretta, and Enrico Gratton

Phase Fluctuations on the Micron-Submicron Scale in GUVs Composed of a Binary Lipid Mixture
Biophys. J. 2008 94: 104-116; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.105353. [Abstract] [Full Text] [PDF]  

Jianjun Pan, Stephanie Tristram-Nagle, Norbert Kucerka, and John F. Nagle

Temperature Dependence of Structure, Bending Rigidity, and Bilayer Interactions of Dioleoylphosphatidylcholine Bilayers
Biophys. J. 2008 94: 117-124; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.115691. [Abstract] [Full Text] [PDF]  

Jihong Tong, Lam Nguyen, Adriana Vidal, Sidney A. Simon, J. H. Pate Skene, and Thomas J. McIntosh

Role of GAP-43 in Sequestering Phosphatidylinositol 4,5-Bisphosphate to Raft Bilayers
Biophys. J. 2008 94: 125-133; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.110536. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

C. Douarche, J.-L. Sikorav, and A. Goldar

Aggregation and Adsorption at the Air-Water Interface of Bacteriophage X174 Single-Stranded DNA
Biophys. J. 2008 94: 134-146; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.107771. [Abstract] [Full Text] [PDF]  

L. Kelbauskas, N. Chan, R. Bash, P. DeBartolo, J. Sun, N. Woodbury, and D. Lohr

Sequence-Dependent Variations Associated with H2A/H2B Depletion of Nucleosomes
Biophys. J. 2008 94: 147-158; Published ahead of print on October 12, 2007 as doi:10.1529/biophysj.107.111906. [Abstract] [Full Text] [PDF] [Supplement]  

John Peter Rickgauer, Derek N. Fuller, Shelley Grimes, Paul J. Jardine, Dwight L. Anderson, and Douglas E. Smith

Portal Motor Velocity and Internal Force Resisting Viral DNA Packaging in Bacteriophage 29
Biophys. J. 2008 94: 159-167; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.104612. [Abstract] [Full Text] [PDF] [Supplement]  

PHOTOBIOPHYSICS:

Ana Jiménez-Banzo, Santi Nonell, Johan Hofkens, and Cristina Flors

Singlet Oxygen Photosensitization by EGFP and its Chromophore HBDI
Biophys. J. 2008 94: 168-172; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.107128. [Abstract] [Full Text] [PDF]  

PROTEINS:

Dmitri I. Svergun, Fredrik Ekström, Kim D. Vandegriff, Ashok Malavalli, Dale A. Baker, Calle Nilsson, and Robert M. Winslow

Solution Structure of Poly(ethylene) Glycol-Conjugated Hemoglobin Revealed by Small-Angle X-Ray Scattering: Implications for a New Oxygen Therapeutic
Biophys. J. 2008 94: 173-181; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.114314. [Abstract] [Full Text] [PDF]  

Anders B. Norgaard, Jesper Ferkinghoff-Borg, and Kresten Lindorff-Larsen

Experimental Parameterization of an Energy Function for the Simulation of Unfolded Proteins
Biophys. J. 2008 94: 182-192; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.108241. [Abstract] [Full Text] [PDF] [Supplement]  

Ekaterina P. Lamber, Matthias Wilmanns, and Dmitri I. Svergun

Low Resolution Structural Models of the Basic Helix-Loop-Helix Leucine Zipper Domain of Upstream Stimulatory Factor 1 and Its Complexes with DNA from Small Angle X-Ray Scattering Data
Biophys. J. 2008 94: 193-197; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.112243. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Kaisa Kisko, Géza R. Szilvay, Ulla Vainio, Markus B. Linder, and Ritva Serimaa

Interactions of Hydrophobin Proteins in Solution Studied by Small-Angle X-Ray Scattering
Biophys. J. 2008 94: 198-206; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.112359. [Abstract] [Full Text] [PDF] [Supplement]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Benedikt Sabass, Margaret L. Gardel, Clare M. Waterman, and Ulrich S. Schwarz

High Resolution Traction Force Microscopy Based on Experimental and Computational Advances
Biophys. J. 2008 94: 207-220; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.113670. [Abstract] [Full Text] [PDF]  

Jonas Ries, Thomas Ruckstuhl, Dorinel Verdes, and Petra Schwille

Supercritical Angle Fluorescence Correlation Spectroscopy
Biophys. J. 2008 94: 221-229; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.115998. [Abstract] [Full Text] [PDF]  

Alexandre Yersin, Toshiya Osada, and Atsushi Ikai

Exploring Transferrin-Receptor Interactions at the Single-Molecule Level
Biophys. J. 2008 94: 230-240; Published ahead of print on September 14, 2007 as doi:10.1529/biophysj.107.114637. [Abstract] [Full Text] [PDF] [Supplement]  

Thomas Vosegaard, Miya Kamihira-Ishijima, Anthony Watts, and Niels Chr. Nielsen

Helix Conformations in 7TM Membrane Proteins Determined Using Oriented-Sample Solid-State NMR with Multiple Residue-Specific ¹⁵N Labeling
Biophys. J. 2008 94: 241-250; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.116004. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Galina Reshes, Sharon Vanounou, Itzhak Fishov, and Mario Feingold

Cell Shape Dynamics in Escherichia coli
Biophys. J. 2008 94: 251-264; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.104398. [Abstract] [Full Text] [PDF]  

A. Upadhyaya, M. Baraban, J. Wong, P. Matsudaira, A. van Oudenaarden, and L. Mahadevan

Power-Limited Contraction Dynamics of Vorticella convallaria: An Ultrafast Biological Spring
Biophys. J. 2008 94: 265-272; Published ahead of print on October 12, 2007 as doi:10.1529/biophysj.107.108852. [Abstract] [Full Text] [PDF] [Supplement]  

Bradley K. Wacker, Shannon K. Alford, Evan A. Scott, Meghna Das Thakur, Gregory D. Longmore, and Donald L. Elbert

Endothelial Cell Migration on RGD-Peptide-Containing PEG Hydrogels in the Presence of Sphingosine 1-Phosphate
Biophys. J. 2008 94: 273-285; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.109074. [Abstract] [Full Text] [PDF] [Supplement]  

Jing-Yi Zheng, Yien-Che Tsai, Pradeep Kadimcherla, Rong Zhang, Julia Shi, George A. Oyler, and Nada N. Boustany

The C-Terminal Transmembrane Domain of Bcl-x_L Mediates Changes in Mitochondrial Morphology
Biophys. J. 2008 94: 286-297; Published ahead of print on August 31, 2007 as doi:10.1529/biophysj.107.104323. [Abstract] [Full Text] [PDF]  

Zvi Teff, Zvi Priel, and Levi A. Gheber

The Forces Applied by Cilia Depend Linearly on Their Frequency Due to Constant Geometry of the Effective Stroke
Biophys. J. 2008 94: 298-305; Published ahead of print on September 14, 2007 as doi:10.1529/biophysj.107.111724. [Abstract] [Full Text] [PDF]  

Brian C. Carter, Michael Vershinin, and Steven P. Gross

A Comparison of Step-Detection Methods: How Well Can You Do?
Biophys. J. 2008 94: 306-319; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.110601. [Abstract] [Full Text] [PDF] [Supplement]  

Micha Gladnikoff and Itay Rousso

Directly Monitoring Individual Retrovirus Budding Events Using Atomic Force Microscopy
Biophys. J. 2008 94: 320-326; Published ahead of print on September 7, 2007 as doi:10.1529/biophysj.107.114579. [Abstract] [Full Text] [PDF]  

COMMENTS TO THE EDITOR:

Kenneth S. Campbell and Martin Lakie

Response to Bianco et al.: Interaction Forces between F-actin and Titin PEVK Domain Measured with Optical Tweezers
Biophys. J. 2008 94: 327-328; Published ahead of print on October 5, 2007 as doi:10.1529/biophysj.107.114322. [Abstract] [Full Text] [PDF]  

Miklós S. Z. Kellermayer, Pasquale Bianco, Zsolt Mártonfalvi, Attila Nagy, András Kengyel, Dávid Szatmári, Tamás Huber, Marco Linari, Marco Caremani, and Vincenzo Lombardi

Muscle Thixotropy: More than Just Cross-Bridges? Response to Comment by Campbell and Lakie
Biophys. J. 2008 94: 329-330; Published ahead of print on October 5, 2007 as doi:10.1529/biophysj.107.122309. [Abstract] [Full Text] [PDF]  

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