BIOENERGETICS

From the Current Issue: January 15 2007; 92 (2) [Table of Contents]

M. Flores, R. Isaacson, E. Abresch, R. Calvo, W. Lubitz, and G. Feher

Protein-Cofactor Interactions in Bacterial Reaction Centers from Rhodobacter sphaeroides R-26: II. Geometry of the Hydrogen Bonds to the Primary Quinone by ¹H and ²H ENDOR Spectroscopy
Biophys. J. 2007. 92:671-682. [Abstract] [Full Text] [PDF]

From Past Issues:

Antonio De Riso, David L. Jenson, and Bridgette A. Barry

Calcium Exchange and Structural Changes during the Photosynthetic Oxygen Evolving Cycle
Biophys. J. 2006. 91:1999-2008. [Abstract] [Full Text] [PDF]

Sonia Cortassa, Miguel A. Aon, Brian O'Rourke, Robert Jacques, Hsiang-Jer Tseng, Eduardo Marban, and Raimond L. Winslow

A Computational Model Integrating Electrophysiology, Contraction, and Mitochondrial Bioenergetics in the Ventricular Myocyte
Biophys. J. 2006. 91:1564-1589. [Abstract] [Full Text] [PDF]

Carl S. Helrich, Jason A. Schmucker, and Dixon J. Woodbury

Evidence that Nystatin Channels Form at the Boundaries, Not the Interiors of Lipid Domains
Biophys. J. 2006. 91:1116-1127. [Abstract] [Full Text] [PDF]

M. Flores, R. Isaacson, E. Abresch, R. Calvo, W. Lubitz, and G. Feher

Protein-Cofactor Interactions in Bacterial Reaction Centers from Rhodobacter sphaeroides R-26: I. Identification of the ENDOR Lines Associated with the Hydrogen Bonds to the Primary Quinone Q_A^•–
Biophys. J. 2006. 90:3356-3362. [Abstract] [Full Text] [PDF]

Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt, and Vassily Hatzimanikatis

Genome-Scale Thermodynamic Analysis of Escherichia coli Metabolism
Biophys. J. 2006. 90:1453-1461. [Abstract] [Full Text] [PDF]

Hiroshi Ishikita, Dietmar Stehlik, John H. Golbeck, and Ernst-Walter Knapp

Electrostatic Influence of PsaC Protein Binding to the PsaA/PsaB Heterodimer in Photosystem I
Biophys. J. 2006. 90:1081-1089. [Abstract] [Full Text] [PDF]

Elizabeth L. Gross and Irving Rosenberg

A Brownian Dynamics Study of the Interaction of Phormidium Cytochrome f with Various Cyanobacterial Plastocyanins
Biophys. J. 2006. 90:366-380. [Abstract] [Full Text] [PDF]

Man Liu, Maria Krasteva, and Andreas Barth

Interactions of Phosphate Groups of ATP and Aspartyl Phosphate with the Sarcoplasmic Reticulum Ca²⁺-ATPase: An FTIR Study
Biophys. J. 2005. 89:4352-4363. [Abstract] [Full Text] [PDF]

Esmael J. Haddadian and Elizabeth L. Gross

Brownian Dynamics Study of Cytochrome f Interactions with Cytochrome c₆ and Plastocyanin in Chlamydomonas reinhardtii Plastocyanin, and Cytochrome c₆ Mutants
Biophys. J. 2005. 88:2323-2339. [Abstract] [Full Text] [PDF]

Tomohiro Hattori, Koichi Watanabe, Yukiko Uechi, Hisashi Yoshioka, and Yoshihiro Ohta

Repetitive Transient Depolarizations of the Inner Mitochondrial Membrane Induced by Proton Pumping
Biophys. J. 2005. 88:2340-2349. [Abstract] [Full Text] [PDF]

Alexander H. Haas and C. Roy D. Lancaster

Calculated Coupling of Transmembrane Electron and Proton Transfer in Dihemic Quinol:Fumarate Reductase
Biophys. J. 2004. 87:4298-4315. [Abstract] [Full Text] [PDF]

Bruno L. Victor, Antonio M. Baptista, and Claudio M. Soares

Theoretical Identification of Proton Channels in the Quinol Oxidase aa₃ from Acidianus ambivalens
Biophys. J. 2004. 87:4316-4325. [Abstract] [Full Text] [PDF]

Olga Vergun and Ian J. Reynolds

Fluctuations in Mitochondrial Membrane Potential in Single Isolated Brain Mitochondria: Modulation by Adenine Nucleotides and Ca²⁺
Biophys. J. 2004. 87:3585-3593. [Abstract] [Full Text] [PDF]

Michael J. Franklin, William S. A. Brusilow, and Dixon J. Woodbury

Determination of Proton Flux and Conductance at pH 6.8 through Single F_o Sectors from Escherichia coli
Biophys. J. 2004. 87:3594-3599. [Abstract] [Full Text] [PDF]

Teruhisa Hirai and Sriram Subramaniam

Structure and Transport Mechanism of the Bacterial Oxalate Transporter OxlT
Biophys. J. 2004. 87:3600-3607. [Abstract] [Full Text] [PDF]

Alice Haddy, K. V. Lakshmi, Gary W. Brudvig, and Harry A. Frank

Q-Band EPR of the S₂ State of Photosystem II Confirms an S = 5/2 Origin of the X-Band g = 4.1 Signal
Biophys. J. 2004. 87:2885-2896. [Abstract] [Full Text] [PDF]

Elizabeth L. Gross

A Brownian Dynamics Study of the Interaction of Phormidium laminosum Plastocyanin with Phormidium laminosum Cytochrome f
Biophys. J. 2004. 87:2043-2059. [Abstract] [Full Text] [PDF]

Sonia Cortassa, Miguel A. Aon, Raimond L. Winslow, and Brian O'Rourke

A Mitochondrial Oscillator Dependent on Reactive Oxygen Species
Biophys. J. 2004. 87:2060-2073. [Abstract] [Full Text] [PDF]

Jie-Lou Liao and David N. Beratan

How Does Protein Architecture Facilitate the Transduction of ATP Chemical-Bond Energy into Mechanical Work? The Cases of Nitrogenase and ATP Binding-Cassette Proteins
Biophys. J. 2004. 87:1369-1377. [Abstract] [Full Text] [PDF]

Marko Vendelin, Maris Lemba, and Valdur A. Saks

Analysis of Functional Coupling: Mitochondrial Creatine Kinase and Adenine Nucleotide Translocase
Biophys. J. 2004. 87:696-713. [Abstract] [Full Text] [PDF]

Boris A. Feniouk, Maria A. Kozlova, Dmitry A. Knorre, Dmitry A. Cherepanov, Armen Y. Mulkidjanian, and Wolfgang Junge

The Proton-Driven Rotor of ATP Synthase: Ohmic Conductance (10 fS), and Absence of Voltage Gating
Biophys. J. 2004. 86:4094-4109. [Abstract] [Full Text] [PDF]

Bengt Svensson, David M. Tiede, David R. Nelson, and Bridgette A. Barry

Structural Studies of the Manganese Stabilizing Subunit in Photosystem II
Biophys. J. 2004. 86:1807-1812. [Abstract] [Full Text] [PDF]

Ming-Liang Tan, Ilya Balabin, and Jose Nelson Onuchic

Dynamics of Electron Transfer Pathways in Cytochrome c Oxidase
Biophys. J. 2004. 86:1813-1819. [Abstract] [Full Text] [PDF]

Frederic Joubert, Henry M. Fales, Han Wen, Christian A. Combs, and Robert S. Balaban

NADH Enzyme-Dependent Fluorescence Recovery after Photobleaching (ED-FRAP): Applications to Enzyme and Mitochondrial Reaction Kinetics, In Vitro
Biophys. J. 2004. 86:629-645. [Abstract] [Full Text] [PDF]

Olga Vergun, Tatyana V. Votyakova, and Ian J. Reynolds

Spontaneous Changes in Mitochondrial Membrane Potential in Single Isolated Brain Mitochondria
Biophys. J. 2003. 85:3358-3366. [Abstract] [Full Text] [PDF]

Kiyoshi Ozawa, Yuki Takayama, Fumiko Yasukawa, Tomoaki Ohmura, Michael A. Cusanovich, Yusuke Tomimoto, Hideaki Ogata, Yoshiki Higuchi, and Hideo Akutsu

Role of the Aromatic Ring of Tyr43 in Tetraheme Cytochrome c₃ from Desulfovibrio vulgaris Miyazaki F
Biophys. J. 2003. 85:3367-3374. [Abstract] [Full Text] [PDF]

Francesco Francia, Gerardo Palazzo, Antonia Mallardi, Lorenzo Cordone, and Giovanni Venturoli

Residual Water Modulates Q_A^--to-Q_B Electron Transfer in Bacterial Reaction Centers Embedded in Trehalose Amorphous Matrices
Biophys. J. 2003. 85:2760-2775. [Abstract] [Full Text] [PDF]

Christiane Burzik, Georg Kaim, Peter Dimroth, Ernst Bamberg, and Klaus Fendler

Charge Displacements during ATP-Hydrolysis and Synthesis of the Na⁺-Transporting F_oF₁-ATPase of Ilyobacter tartaricus
Biophys. J. 2003. 85:2044-2054. [Abstract] [Full Text] [PDF]

Elizabeth L. Gross and Douglas C. Pearson Jr.

Brownian Dynamics Simulations of the Interaction of Chlamydomonas Cytochrome f with Plastocyanin and Cytochrome c₆
Biophys. J. 2003. 85:2055-2068. [Abstract] [Full Text] [PDF]

Dmitry A. Cherepanov, Boris A. Feniouk, Wolfgang Junge, and Armen Y. Mulkidjanian

Low Dielectric Permittivity of Water at the Membrane Interface: Effect on the Energy Coupling Mechanism in Biological Membranes
Biophys. J. 2003. 85:1307-1316. [Abstract] [Full Text] [PDF]

Kelly M. Halverson and Bridgette A. Barry

Sucrose and Glycerol Effects on Photosystem II
Biophys. J. 2003. 85:1317-1325. [Abstract] [Full Text] [PDF]

Audrey S. Pham and Gregory D. Reinhart

Quantification of Allosteric Influence of Escherichia coli Phosphofructokinase by Frequency Domain Fluorescence
Biophys. J. 2003. 85:656-666. [Abstract] [Full Text] [PDF]

John C. Croney, Michael K. Helms, David M. Jameson, and Randy W. Larsen

Conformational Dynamics and Temperature Dependence of Photoinduced Electron Transfer within Self-Assembled Coproporphyrin:Cytochrome c Complexes
Biophys. J. 2003. 84:4135-4143. [Abstract] [Full Text] [PDF]

Valdur Saks, Andrey Kuznetsov, Tatiana Andrienko, Yves Usson, Florence Appaix, Karen Guerrero, Tuuli Kaambre, Peeter Sikk, Maris Lemba, and Marko Vendelin

Heterogeneity of ADP Diffusion and Regulation of Respiration in Cardiac Cells
Biophys. J. 2003. 84:3436-3456. [Abstract] [Full Text] [PDF]

Erin Ching, Robert B. Gennis, and Randy W. Larsen

Kinetics of Intramolecular Electron Transfer in Cytochrome bo₃ from Escherichia coli
Biophys. J. 2003. 84:2728-2733. [Abstract] [Full Text] [PDF]

Sonia Cortassa, Miguel A. Aon, Eduardo Marban, Raimond L. Winslow, and Brian O'Rourke

An Integrated Model of Cardiac Mitochondrial Energy Metabolism and Calcium Dynamics
Biophys. J. 2003. 84:2734-2755. [Abstract] [Full Text] [PDF]

Antoine Taly, Pierre Sebban, Jeremy C. Smith, and G. Matthias Ullmann

The Position of Q_B in the Photosynthetic Reaction Center Depends on pH: A Theoretical Analysis of the Proton Uptake upon Q_B Reduction
Biophys. J. 2003. 84:2090-2098. [Abstract] [Full Text] [PDF]

Paul W. Chun

Molecular-Level Thermodynamic Switch Controls Chemical Equilibrium in Sequence-Specific Hydrophobic Interaction of 35 Dipeptide Pairs
Biophys. J. 2003. 84:1352-1369. [Abstract] [Full Text] [PDF]

Pavel Pospisil, Haumann Michael, Jens Dittmer, V. Armando Sole, and Holger Dau

Stepwise Transition of the Tetra-Manganese Complex of Photosystem II to a Binuclear Mn₂(µ-O)₂ Complex in Response to a Temperature Jump: A Time-Resolved Structural Investigation Employing X-Ray Absorption Spectroscopy
Biophys. J. 2003. 84:1370-1386. [Abstract] [Full Text] [PDF]

Bettina Schatzler, Norbert A. Dencher, Joerg Tittor, Dieter Oesterhelt, Sharon Yaniv-Checover, Esther Nachliel, and Menachem Gutman

Subsecond Proton-Hole Propagation in Bacteriorhodopsin
Biophys. J. 2003. 84:671-686. [Abstract] [Full Text] [PDF]

Vladimir P. Shinkarev, Boris Zybailov, Ilya R. Vassiliev, and John H. Golbeck

Modeling of the P700⁺ Charge Recombination Kinetics with Phylloquinone and Plastoquinone-9 in the A₁ Site of Photosystem I
Biophys. J. 2002. 83:2885-2897. [Abstract] [Full Text] [PDF]

Giuseppe Inesi, Zhongsen Zhang, and David Lewis

Cooperative Setting for Long-Range Linkage of Ca²⁺ Binding and ATP Synthesis in the Ca²⁺ ATPase
Biophys. J. 2002. 83:2327-2332. [Abstract] [Full Text] [PDF]

Roxana E. Georgescu, Emil G. Alexov, and Marilyn R. Gunner

Combining Conformational Flexibility and Continuum Electrostatics for Calculating pK_as in Proteins
Biophys. J. 2002. 83:1731-1748. [Abstract] [Full Text] [PDF]

Eiro Muneyuki, Chie Shibazaki, Yoichiro Wada, Manabu Yakushizin, and Hiroyuki Ohtani

Cl Concentration Dependence of Photovoltage Generation by Halorhodopsin from Halobacterium salinarum
Biophys. J. 2002. 83:1749-1759. [Abstract] [Full Text] [PDF]

Petra Fromme, Herve Bottin, Norbert Krauss, and Pierre Setif

Crystallization and Electron Paramagnetic Resonance Characterization of the Complex of Photosystem I with its Natural Electron Acceptor Ferredoxin
Biophys. J. 2002. 83:1760-1773. [Abstract] [Full Text] [PDF]

Rolf Brandes and Donald M. Bers

Simultaneous Measurements of Mitochondrial NADH and Ca²⁺ during Increased Work in Intact Rat Heart Trabeculae
Biophys. J. 2002. 83:587-604. [Abstract] [Full Text] [PDF]

Yuri Georgievskii, Emile S. Medvedev, and Alexei A. Stuchebrukhov

Proton Transport via the Membrane Surface
Biophys. J. 2002. 82:2833-2846. [Abstract] [Full Text] [PDF]

Melinda Lakatos, Geza I. Groma, Constanta Ganea, Janos K. Lanyi, and Gyorgy Varo

Characterization of the Azide-Dependent Bacteriorhodopsin-Like Photocycle of Salinarum Halorhodopsin
Biophys. J. 2002. 82:1687-1695. [Abstract] [Full Text] [PDF]

Boris A. Feniouk, Dmitry A. Cherepanov, Natalia E. Voskoboynikova, Armen Y. Mulkidjanian, and Wolfgang Junge

Chromatophore Vesicles of Rhodobacter capsulatus Contain on Average One F_OF₁-ATP Synthase Each
Biophys. J. 2002. 82:1115-1122. [Abstract] [Full Text] [PDF]

Gerardo Palazzo, Antonia Mallardi, Alejandro Hochkoeppler, Lorenzo Cordone, and Giovanni Venturoli

Electron Transfer Kinetics in Photosynthetic Reaction Centers Embedded in Trehalose Glasses: Trapping of Conformational Substates at Room Temperature
Biophys. J. 2002. 82:558-568. [Abstract] [Full Text] [PDF]

Dirk Heitbrink, Hakan Sigurdson, Carsten Bolwien, Peter Brzezinski, and Joachim Heberle

Transient Binding of CO to Cu_B in Cytochrome c Oxidase Is Dynamically Linked to Structural Changes around a Carboxyl Group: A Time-Resolved Step-Scan Fourier Transform Infrared Investigation
Biophys. J. 2002. 82:1-10. [Abstract] [Full Text] [PDF]

J. Michael O'Donnell, Nathaniel M. Alpert, Lawrence T. White, and E. Douglas Lewandowski

Coupling of Mitochondrial Fatty Acid Uptake to Oxidative Flux in the Intact Heart
Biophys. J. 2002. 82:11-18. [Abstract] [Full Text] [PDF]

Frederic Joubert, Jacqueline A. Hoerter, and Jean-Luc Mazet

Discrimination of Cardiac Subcellular Creatine Kinase Fluxes by NMR Spectroscopy: A New Method of Analysis
Biophys. J. 2001. 81:2995-3004. [Abstract] [Full Text] [PDF]

Taka-aki Ono, Annette Rompel, Hiroyuki Mino, and Noriyuki Chiba

Ca²⁺ Function in Photosynthetic Oxygen Evolution Studied by Alkali Metal Cations Substitution
Biophys. J. 2001. 81:1831-1840. [Abstract] [Full Text] [PDF]

Pierre Setif, Daisuke Seo, and Hidehiro Sakurai

Photoreduction and Reoxidation of the Three Iron-Sulfur Clusters of Reaction Centers of Green Sulfur Bacteria
Biophys. J. 2001. 81:1208-1219. [Abstract] [Full Text] [PDF]

Oliver Panke, Dmitry A. Cherepanov, Karin Gumbiowski, Siegfried Engelbrecht, and Wolfgang Junge

Viscoelastic Dynamics of Actin Filaments Coupled to Rotary F-ATPase: Angular Torque Profile of the Enzyme
Biophys. J. 2001. 81:1220-1233. [Abstract] [Full Text] [PDF]

Dmitry A. Cherepanov and Wolfgang Junge

Viscoelastic Dynamics of Actin Filaments Coupled to Rotary F-ATPase: Curvature as an Indicator of the Torque
Biophys. J. 2001. 81:1234-1244. [Abstract] [Full Text] [PDF]

Brian W. Beck, Qian Xie, and Toshiko Ichiye

Sequence Determination of Reduction Potentials by Cysteinyl Hydrogen Bonds and Peptide Dipoles in [4Fe-4S] Ferredoxins
Biophys. J. 2001. 81:601-613. [Abstract] [Full Text] [PDF]

Tapan Kanti Das, Farol L. Tomson, Robert B. Gennis, Michael Gordon, and Denis L. Rousseau

pH-Dependent Structural Changes at the Heme-Copper Binuclear Center of Cytochrome c Oxidase
Biophys. J. 2001. 80:2039-2045. [Abstract] [Full Text] [PDF]

Krzysztof Gibasiewicz, Andrzej Dobek, Jacques Breton, and Winfried Leibl

Modulation of Primary Radical Pair Kinetics and Energetics in Photosystem II by the Redox State of the Quinone Electron Acceptor Q_A
Biophys. J. 2001. 80:1617-1630. [Abstract] [Full Text] [PDF]

Povilas Kietis, Mikas Vengris, and Leonas Valkunas

Electrical-to-Mechanical Coupling in Purple Membranes: Membrane as Electrostrictive Medium
Biophys. J. 2001. 80:1631-1640. [Abstract] [Full Text] [PDF]

Dmitry A. Cherepanov, Lev I. Krishtalik, and Armen Y. Mulkidjanian

Photosynthetic Electron Transfer Controlled by Protein Relaxation: Analysis by Langevin Stochastic Approach
Biophys. J. 2001. 80:1033-1049. [Abstract] [Full Text] [PDF]

Ana Damjanovic, Thorsten Ritz, and Klaus Schulten

Excitation Transfer in the Peridinin-Chlorophyll-Protein of Amphidinium carterae
Biophys. J. 2000. 79:1695-1705. [Abstract] [Full Text] [PDF]

Gianfelice Cinque, Roberta Croce, Alfred Holzwarth, and Roberto Bassi

Energy Transfer among CP29 Chlorophylls: Calculated Förster Rates and Experimental Transient Absorption at Room Temperature
Biophys. J. 2000. 79:1706-1717. [Abstract] [Full Text] [PDF]

Gerardo Palazzo, Antonia Mallardi, Mauro Giustini, Debora Berti, and Giovanni Venturoli

Cumulant Analysis of Charge Recombination Kinetics in Bacterial Reaction Centers Reconstituted into Lipid Vesicles
Biophys. J. 2000. 79:1171-1179. [Abstract] [Full Text] [PDF]

F. Joubert, B. Gillet, J. L. Mazet, P. Mateo, J.-C. Beloeil, and J. A. Hoerter

Evidence for Myocardial ATP Compartmentation from NMR Inversion Transfer Analysis of Creatine Kinase Fluxes
Biophys. J. 2000. 79:1-13. [Abstract] [Full Text] [PDF]

Kinga Turzo, Gabor Laczko, Zoltan Filus, and Peter Maroti

Quinone-Dependent Delayed Fluorescence from the Reaction Center of Photosynthetic Bacteria
Biophys. J. 2000. 79:14-25. [Abstract] [Full Text] [PDF]

Wim J. Vredenberg

A Three-State Model for Energy Trapping and Chlorophyll Fluorescence in Photosystem II Incorporating Radical Pair Recombination
Biophys. J. 2000. 79:26-38. [Abstract] [Full Text] [PDF]

Donna R. Trollinger, Wayne E. Cascio, and John J. Lemasters

Mitochondrial Calcium Transients in Adult Rabbit Cardiac Myocytes: Inhibition by Ruthenium Red and Artifacts Caused by Lysosomal Loading of Ca²⁺-Indicating Fluorophores
Biophys. J. 2000. 79:39-50. [Abstract] [Full Text] [PDF]

Robin A. de Graaf, Arnaud van Kranenburg, and Klaas Nicolay

In Vivo ³¹P-NMR Diffusion Spectroscopy of ATP and Phosphocreatine in Rat Skeletal Muscle
Biophys. J. 2000. 78:1657-1664. [Abstract] [Full Text] [PDF]

Martin Bier, Barbara M. Bakker, and Hans V. Westerhoff

How Yeast Cells Synchronize their Glycolytic Oscillations: A Perturbation Analytic Treatment
Biophys. J. 2000. 78:1087-1093. [Abstract] [Full Text] [PDF]

Paul W. Chun

A Thermodynamic Molecular Switch in Biological Systems: Ribonuclease S' Fragment Complementation Reactions
Biophys. J. 2000. 78:416-429. [Abstract] [Full Text] [PDF]

J. E. Ponce-Hornos, K. D. Philipson, P. Bonazzola, and G. A. Langer

Energetics of Na⁺-Ca²⁺ Exchange in Resting Cardiac Muscle
Biophys. J. 1999. 77:3319-3327. [Abstract] [Full Text] [PDF]

Marie-Louise Groot, Raoul N. Frese, Frank L. de Weerd, Krystyna Bromek, Asa Pettersson, Erwin J. G. Peterman, Ivo H. M. van Stokkum, Rienk van Grondelle, and Jan P. Dekker

Spectroscopic Properties of the CP43 Core Antenna Protein of Photosystem II
Biophys. J. 1999. 77:3328-3340. [Abstract] [Full Text] [PDF]

Suming Hua, Daniele Fabris, and Giuseppe Inesi

Characterization of Calcium, Nucleotide, Phosphate, and Vanadate Bound States by Derivatization of Sarcoplasmic Reticulum ATPase with ThioGlo1
Biophys. J. 1999. 77:2217-2225. [Abstract] [Full Text] [PDF]

Rolf Brandes and Donald M. Bers

Analysis of the Mechanisms of Mitochondrial NADH Regulation in Cardiac Trabeculae
Biophys. J. 1999. 77:1666-1682. [Abstract] [Full Text] [PDF]

Hilde A. Rinia, Rudy A. Demel, Jan P. J. M. van der Eerden, and Ben de Kruijff

Blistering of Langmuir-Blodgett Bilayers Containing Anionic Phospholipids as Observed by Atomic Force Microscopy
Biophys. J. 1999. 77:1683-1693. [Abstract] [Full Text] [PDF]

Martin P. Horvath, Robert A. Copeland, and Marvin W. Makinen

The Second Derivative Electronic Absorption Spectrum of Cytochrome c Oxidase in the Soret Region
Biophys. J. 1999. 77:1694-1711. [Abstract] [Full Text] [PDF]

Milagros Medina, Anabel Lostao, Javier Sancho, Carlos Gomez-Moreno, Richard Cammack, Pablo J. Alonso, and Jesus I. Martinez

Electron-Nuclear Double Resonance and Hyperfine Sublevel Correlation Spectroscopic Studies of Flavodoxin Mutants from Anabaena sp. PCC 7119
Biophys. J. 1999. 77:1712-1720. [Abstract] [Full Text] [PDF]

Sergei Savikhin, Wu Xu, Victor Soukoulis, Parag R. Chitnis, and Walter S. Struve

Ultrafast Primary Processes in Photosystem I of the Cyanobacterium Synechocystis sp. PCC 6803
Biophys. J. 1999. 76:3278-3288. [Abstract] [Full Text] [PDF]

Robert R. Hudgins, Yi Mao, Mark A. Ratner, and Martin F. Jarrold

Conformations of Gly_nH⁺ and Ala_nH⁺ Peptides in the Gas Phase
Biophys. J. 1999. 76:1591-1597. [Abstract] [Full Text] [PDF]

Russell C. Scaduto Jr. and Lee W. Grotyohann

Measurement of Mitochondrial Membrane Potential Using Fluorescent Rhodamine Derivatives
Biophys. J. 1999. 76:469-477. [Abstract] [Full Text] [PDF]

Issaku Ueda, Hideyuki Minami, Hitoshi Matsuki, and Tohru Inoue

Does Pressure Antagonize Anesthesia? High-Pressure Stopped-Flow Study of Firefly Luciferase and Anatomy of Initial Flash
Biophys. J. 1999. 76:478-482. [Abstract] [Full Text] [PDF]

Issaku Ueda, Hitoshi Matsuki, Hiroshi Kamaya, and P. R. Krishna

Does Pressure Antagonize Anesthesia? Opposite Effects on Specific and Nonspecific Inhibitors of Firefly Luciferase
Biophys. J. 1999. 76:483-488. [Abstract] [Full Text] [PDF]

Krisztina Ludmann, Csilla Gergely, and Gyorgy Varo

Kinetic and Thermodynamic Study of the Bacteriorhodopsin Photocycle over a Wide pH Range
Biophys. J. 1998. 75:3110-3119. [Abstract] [Full Text] [PDF]

Krisztina Ludmann, Csilla Gergely, Andras Der, and Gyorgy Varo

Electric Signals during the Bacteriorhodopsin Photocycle, Determined over a Wide pH Range
Biophys. J. 1998. 75:3120-3126. [Abstract] [Full Text] [PDF]

Jack A. Kornblatt

The Water Channel of Cytochrome c Oxidase: inferences from Inhibitor Studies
Biophys. J. 1998. 75:3127-3134. [Abstract] [Full Text] [PDF]

Dmitri I. Svergun, Ingo Aldag, Tanja Sieck, Karlheinz Altendorf, Michel H. J. Koch, David J. Kane, Michael B. Kozin, and Gerhard Gruber

A Model of the Quaternary Structure of the Escherichia coli F₁ ATPase from X-Ray Solution Scattering and Evidence for Structural Changes in the Delta Subunit during ATP Hydrolysis
Biophys. J. 1998. 75:2212-2219. [Abstract] [Full Text] [PDF]

Joaquim Villaverde, Josep Cladera, Aloysius Hartog, Jan Berden, Esteve Padros, and Mireia Dunach

Nucleotide and Mg²⁺ Dependency of the Thermal Denaturation of Mitochondrial F₁-ATPase
Biophys. J. 1998. 75:1980-1988. [Abstract] [Full Text] [PDF]

Tomoaki Ohmura, Haruki Nakamura, Katsumi Niki, Michael A. Cusanovich, and Hideo Akutsu

Ionic Strength-Dependent Physicochemical Factors in Cytochrome c₃ Regulating the Electron Transfer Rate
Biophys. J. 1998. 75:1483-1490. [Abstract] [Full Text] [PDF]

Xiche Hu and Klaus Schulten

Model for the Light-Harvesting Complex I (B875) of Rhodobacter sphaeroides
Biophys. J. 1998. 75:683-694. [Abstract] [Full Text] [PDF]

Issaku Ueda and Atsuya Suzuki

Is There a Specific Receptor for Anesthetics? Contrary Effects of Alcohols and Fatty Acids on Phase Transition and Bioluminescence of Firefly Luciferase
Biophys. J. 1998. 75:1052-1057. [Abstract] [Full Text] [PDF]

Dmitrii V. Vavilin, Esa Tyystjarvi, and Eva-Mari Aro

Model for the Fluorescence Induction Curve of Photoinhibited Thylakoids
Biophys. J. 1998. 75:503-512. [Abstract] [Full Text] [PDF]

G. Venturoli, F. Drepper, J. C. Williams, J. P. Allen, X. Lin, and P. Mathis

Effects of Temperature and G° on Electron Transfer from Cytochrome c₂ to the Photosynthetic Reaction Center of the Purple Bacterium Rhodobacter sphaeroides
Biophys. J. 1998. 74:3226-3240. [Abstract] [Full Text] [PDF]

Vladimir I. Novoderezhkin, Alexandra S. Taisova, Zoya G. Fetisova, Robert E. Blankenship, Sergei Savikhin, Daniel R. Buck, and Walter S. Struve

Energy Transfers in the B808-866 Antenna from the Green Bacterium Chloroflexus aurantiacus
Biophys. J. 1998. 74:2069-2075. [Abstract] [Full Text] [PDF]

Jose M. Ortega, Barbara Dohse, Dieter Oesterhelt, and Paul Mathis

Low-Temperature Electron Transfer from Cytochrome to the Special Pair in Rhodopseudomonas viridis: Role of the L162 Residue
Biophys. J. 1998. 74:1135-1148. [Abstract] [Full Text] [PDF]

Sonia C Cortassa, Miguel A Aon, Brian O'Rourke, Robert Jacques, Hsiang-Jer Tseng, Eduardo Marban, and Raimond L Winslow

A computational model integrating electrophysiology, contraction and mitochondrial bioenergetics in the ventricular myocyte
Biophys. J. published ahead of print May 5 2006, 1667936510.1529/biophysj.105.076174. [Abstract]

Marco Flores, Roger A. Isaacson, Edward Abresch, Rafael Calvo, Wolfgang Lubitz, and George Feher

Protein-cofactor Interactions in Bacterial Reaction Centers from Rb. Sphaeroides R-26: I. Identification of the ENDOR Lines Associated with the Hydrogen Bonds to the Primary Quinone Q_A^•-
Biophys. J. published ahead of print February 10 2006, 1647390410.1529/biophysj.105.077883. [Abstract]

Antonio De Riso, David Jenson, and Bridgette A. Barry

Calcium exchange and structural changes during the photosynthetic oxygen-evolving cycle
Biophys. J. published ahead of print June 16 2006, 1678280010.1529/biophysj.106.087171. [Abstract]

Marco Flores, Roger A Isaacson, Edward C Abresch, Rafael Calvo, Wolfgang Lubitz, and George Feher

Protein-cofactor Interactions in Bacterial Reaction Centers from Rhodobacter sphaeroides R-26: II. Geometry of the Hydrogen Bonds to the Primary Quinone Q_A^.- by ¹H and ²H ENDOR Spectroscopy
Biophys. J. published ahead of print October 27 2006, 1707165510.1529/biophysj.106.092460. [Abstract]

Christopher S. Henry, Linda J. Broadbelt, and Vassily Hatzimanikatis

Thermodynamics-based Metabolic Flux Analysis
Biophys. J. published ahead of print December 15 2006, 1717231010.1529/biophysj.106.093138. [Abstract]

Eiro Muneyuki, Takahiro Watanabe-Nakayama, Tetsuya Suzuki, Masasuke Yoshida, Takayuki Nishizaka, and Hiroyuki Noji

Single Molecule Energetics of F₁-ATPase motor
Biophys. J. published ahead of print December 8 2006, 1715857910.1529/biophysj.106.097170. [Abstract]

Tomohiro Hattori, Koichi Watanabe, Yukiko Uechi, Hisashi Yoshioka, and Yoshihiro Ohta

Repetitive transient depolarizations of the inner mitochondrial membrane induced by proton pumping
Biophys. J. published ahead of print January 14 2005, 1565374910.1529/biophysj.104.041483. [Abstract]

Man Liu, Maria L Krasteva, and Andreas Barth

Interactions of phosphate groups of ATP and aspartyl phosphate with the sarcoplasmic reticulum Ca²⁺-ATPase. An FTIR study
Biophys. J. published ahead of print September 16 2005, 1616997310.1529/biophysj.105.061689. [Abstract]

Elizabeth L. Gross and Irving Rosenberg

A Brownian Dynamics Study of the Interaction of Phormidium Cytochrome f with Various Cyanobacterial Plastocyanins
Biophys. J. published ahead of print October 7 2005, 1621485610.1529/biophysj.105.065185. [Abstract]

Hiroshi Ishikita, Dietmar Stehlik, John Golbeck, and Ernst-Walter Knapp

Electrostatic influence of PsaC protein binding to the PsaA/PsaB heterodimer in Photosystem I
Biophys. J. published ahead of print October 28 2005, 1625804310.1529/biophysj.105.069781. [Abstract]

Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt, and Vassily Hatzimanikatis

Genome-scale Thermodynamic Analysis of E. coli Metabolism
Biophys. J. published ahead of print November 18 2005, 1629907510.1529/biophysj.105.071720. [Abstract]

Olga Vergun and Ian J. Reynolds

Fluctuations in Mitochondrial Membrane Potential in Single Isolated Brain Mitochondria: Modulation by Adenine Nucleotides and Ca2+
Biophys. J. published ahead of print August 17 2004, 1531595410.1529/biophysj.104.042671. [Abstract]

Alexander H. Haas and C. Roy D. Lancaster

Calculated Coupling of Transmembrane Electron and Proton Transfer in Dihemic Quinol:Fumarate Reductase
Biophys. J. published ahead of print September 10 2004, 1536141510.1529/biophysj.104.042945. [Abstract]

Michael J. Franklin, William S. A. Brusilow, and Dixon J. Woodbury

Determination of Proton Flux and conductance at pH 6.8 through single F_o sectors from Escherichia coli
Biophys. J. published ahead of print August 31 2004, 1533981910.1529/biophysj.104.044248. [Abstract]

Teruhisa Hirai and Sriram Subramaniam

Structure and transport mechanism of the bacterial oxalate transporter OxlT
Biophys. J. published ahead of print August 31 2004, 1533980510.1529/biophysj.104.049320. [Abstract]

Bruno L Victor, Antonio M. Baptista, and Claudio M. Soares

Theoretical identification of proton channels in the quinol oxidase aa3 from Acidianus ambivalens
Biophys. J. published ahead of print September 17 2004, 1537752210.1529/biophysj.104.049353. [Abstract]

Esmael Jafari Haddaian and Elizabeth L. Gross

Brownian Dynamics Study of Cytochrome f Interactions with Cytochrome c6 and Plastocyanin in the Chlamydomonas reinhardtii, Plastocyanin and Cytochrome c6 Mutants
Biophys. J. published ahead of print December 30 2004, 1562669510.1529/biophysj.104.053561. [Abstract]